PaperBLAST – Find papers about a protein or its homologs

 

Align D0N3P2 to PF10287 (YJL171C_Tos1_C)

D0N3P2 has 488 amino acids

Query:       YJL171C_Tos1_C  [M=228]
Accession:   PF10287.13
Description: Cell wall protein YJL171C/Tos1, C-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-56  175.9   0.0    7.5e-56  175.4   0.0    1.2  1  D0N3P2    


Domain annotation for each sequence (and alignments):
>> D0N3P2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0   7.5e-56   7.5e-56       1     219 [.     250     476 ..     250     485 .. 0.93

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 7.5e-56
  YJL171C_Tos1_C   1 gswkrvayYnaesqtaenvtFlnneggksgsGvfdsalgnslsyassdgvsgassptvledetl..............ssnkEivifsdkkCsdk 81 
                     gsw rv++Y+++++t en+tF+nn++  + sG+   + + ++ yas+dg+++a++ptv+++e++              s++ Ei+i++++kC ++
          D0N3P2 250 GSWPRVSSYSSKDGTVENLTFMNNKNV-DYSGQ---NEHGPQGYASADGKDKADKPTVFSGELVeasdptkigggpgiSTGVEINIMTGEKC-NG 339
                     68***********************95.44555...78899***************************************************.99 PP

  YJL171C_Tos1_C  82 dC.gyyregivayhGfgGakkiflfefempedtksssnadmPAiWlLnakiprtsqYgnasCsCwk....sgCGelDifevlnsg..seklkstl 169
                     +C g+    +  y+G+gG kk+f++e++mp+        d+PAiW+Lna++++++qYg   C+C+     +gCGelDi+ev++++  ++k++++l
          D0N3P2 340 EClGFSG--DNDYKGWGGGKKAFVTEVKMPKGLI----PDQPAIWMLNAQVMHSNQYG---CNCRGmgpvGGCGELDIAEVIETNplRNKVTTHL 425
                     9977765..568******************9776....8*******************...****999999************9999******** PP

  YJL171C_Tos1_C 170 htaqgaetgggssdyfeRptdgtmkvavvfdsse..tikivelddstdfdes 219
                     + ++g+  + g ++++ R++d+ + +++++d+s+   ikivel++ +df+++
          D0N3P2 426 YYYDGSVLSPGGDNFAPRSYDSNTVYVTLIDDSNegLIKIVELES-FDFSQT 476
                     ******************************999978899999988.999864 PP



Or compare D0N3P2 to CDD or PaperBLAST