PaperBLAST – Find papers about a protein or its homologs

 

Align XP_002364442.1 to PF10300 (Iml2-TPR_39)

XP_002364442.1 has 548 amino acids

Query:       Iml2-TPR_39  [M=467]
Accession:   PF10300.13
Description: Iml2/Tetratricopeptide repeat protein 39
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-08   20.2   0.8      2e-08   19.4   0.8    1.3  1  XP_002364442.1  


Domain annotation for each sequence (and alignments):
>> XP_002364442.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.8     2e-08     2e-08     269     389 ..      72     194 ..      68     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2e-08
     Iml2-TPR_39 269 feari.ellkgnldeAlelleeliesqselkqvhhlcyfelalclvflhkykqaansallLvkesk.wSkalYtYlkaacllelykeeekkeake 361
                     f+ r+ + +  + + A++l+++    + + kq+ ++++ ++a+c + l++y  a   a+++++ +    ka+Y+   a c l+ yk+ +k ++  
  XP_002364442.1  72 FKTRLfHQAVEKYTAAIDLICS-NTMTAQTKQILQVLLCNRAFCQINLENYGSAVVDAERVIQMNPlFAKAYYRRGCAYCCLSRYKKAQKDFE-- 163
                     5555424567788999999995.888999************************************8468999998888888888888666555.. PP

     Iml2-TPR_39 362 kavel.lrevpklkqkiag..kslplekFaa 389
                     ++ +l     p+++++ +   k++ le Faa
  XP_002364442.1 164 RVIALsATPDPSVVSRLNEckKQIRLEAFAA 194
                     55555156677888887778899*****986 PP



Or compare XP_002364442.1 to CDD or PaperBLAST