PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10102404 to PF10354 (BMT5-like)

VIMSS10102404 has 555 amino acids

Query:       BMT5-like  [M=168]
Accession:   PF10354.13
Description: rRNA (uridine-N3-)-methyltransferase BTM5-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-45  140.6   0.0    5.5e-45  139.8   0.0    1.4  1  VIMSS10102404  


Domain annotation for each sequence (and alignments):
>> VIMSS10102404  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   5.5e-45   5.5e-45      26     168 .]       3     147 ..       1     147 [. 0.94

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 5.5e-45
      BMT5-like  26 lvatsldseeeleekypeaeenleeLeeegvkvlfgvDatklekeeklkkkkfdriiFnFPhvGgkskdver...nirknqeLlkkFfksakellk 118
                    ++atsldse+el+ ky +a +n++ L++ g+ + ++vD+++++ +++l+ +++dri+FnFPh+G +   +e     i++++eL+++F+++ake+l+
  VIMSS10102404   3 ITATSLDSEDELSIKYMDAVDNINILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELssrAIESHKELVRGFLENAKEMLE 98 
                    8*******************************************99*****************987754443455********************* PP

      BMT5-like 119 eegeilvtlkegeppydswnieelakeaglklersvkFdaeaypgYkhkr 168
                    e+gei++t+k++ p +++w i++l+k +glkl ++ kF+ ++ypgY  kr
  VIMSS10102404  99 EDGEIHITHKTTYP-FSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITKR 147
                    *************7.*******************************8876 PP



Or compare VIMSS10102404 to CDD or PaperBLAST