NP_001101000.1 has 226 amino acids
Query: UPF0552 [M=224]
Accession: PF10574.13
Description: Arp2/3-interacting proteins Arpin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.9e-116 371.0 0.0 1.1e-115 370.8 0.0 1.0 1 NP_001101000.1
Domain annotation for each sequence (and alignments):
>> NP_001101000.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 370.8 0.0 1.1e-115 1.1e-115 1 224 [] 1 224 [. 1 224 [. 1.00
Alignments for each domain:
== domain 1 score: 370.8 bits; conditional E-value: 1.1e-115
UPF0552 1 msriYdntaLqnkpvkneklagvwdpsayqrGaGvllegklvdvsrhsitDakgkkeryyvlyikpsrihrrkfdakgkeiepnfsetkkvntGf 95
msriY+++aL+nk+v++ +l+g+wdp+++q G+Gvlleg+lvdvsrhsi Da+g+keryyvlyi+ps ihrrkfd kg+eiepnfs+t+kvntGf
NP_001101000.1 1 MSRIYHDSALRNKAVQSVRLPGTWDPTTHQGGSGVLLEGELVDVSRHSILDAHGRKERYYVLYIQPSCIHRRKFDPKGNEIEPNFSATRKVNTGF 95
9********************************************************************************************** PP
UPF0552 96 LmssykveakgesDrlseeeLkklvnktellkvtekhtpeetlafwleeaeleklelekgdevrlktkGdsPfieslakldagtvtkcnfaGDek 190
Lmss+kveakg++Drl+ e Lk lvnk ell++te+ tp++t+afw++e+e+e +ele g +vrlkt+Gd+Pfi+slakl+ gtvtkcnfaGD+k
NP_001101000.1 96 LMSSFKVEAKGDTDRLTLEVLKGLVNKPELLELTESLTPDQTVAFWMPESEMEVMELELGTGVRLKTRGDGPFIDSLAKLELGTVTKCNFAGDGK 190
*********************************************************************************************** PP
UPF0552 191 vGasWtdkimankskeeeaeetkeqGdgaeddeW 224
+GasWtd+ima+ks+e ++ e +eqGdgaed+eW
NP_001101000.1 191 TGASWTDNIMAQKSSERNTAEIREQGDGAEDEEW 224
********************************** PP
Or compare NP_001101000.1 to CDD or PaperBLAST