PaperBLAST – Find papers about a protein or its homologs

 

Align NP_566678.1 to PF10615 (DUF2470)

NP_566678.1 has 317 amino acids

Query:       DUF2470  [M=77]
Accession:   PF10615.12
Description: Domain of unknown function (DUF2470)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-10   27.2   0.0    4.6e-10   26.4   0.0    1.5  1  NP_566678.1  


Domain annotation for each sequence (and alignments):
>> NP_566678.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.6e-10   4.6e-10       2      72 ..     205     275 ..     204     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.6e-10
                  HHHHHHHHHH-HHHHHHHHHHCST-TTC.CEEEEEEE-SSEEEEEE.C.....CEEEEEE-SS---SCCHHHH CS
      DUF2470   2 ariiaHMNaDHaddlllylrhygkvkea.kearmtdidldgltlrl.takagsektvripFdpplkswaeare 72 
                  ++i++  Na  ++d+ +++ +y + +   +e +m ++d+ g++lr+   +     +vripF+ ++++ + a++
  NP_566678.1 205 EDIVNQINANNMEDIFRFCNVYVDLDFVvSETKMIWMDRLGFDLRVwSPRG--VYDVRIPFPMEVTDEKGAKS 275
                  679999*****************9999988889************974344..589**********9998886 PP



Or compare NP_566678.1 to CDD or PaperBLAST