PaperBLAST – Find papers about a protein or its homologs

 

Align NP_417948.4 to PF10951 (DUF2776)

NP_417948.4 has 350 amino acids

Query:       DUF2776  [M=348]
Accession:   PF10951.12
Description: Protein of unknown function (DUF2776)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.9e-161  521.0  32.7     1e-160  520.8  32.7    1.0  1  NP_417948.4  


Domain annotation for each sequence (and alignments):
>> NP_417948.4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.8  32.7    1e-160    1e-160       1     347 [.       1     347 [.       1     348 [. 0.99

  Alignments for each domain:
  == domain 1  score: 520.8 bits;  conditional E-value: 1e-160
      DUF2776   1 mnygisvlfrliPllmaviclalGlfvlelgkdserlvaghvlislgaiclalfataatiirqlikkyntvlklllPilGylvavitivvGlvllala 98 
                  mn++i++lf+liPl+m++ic+alG fvle++ +se++vaghvlisl+aiclalf+ta++ii+ql++ +nt++++l+Pi+Gy+ ++it+++G++lla +
  NP_417948.4   1 MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGN 98 
                  9**********************************************************************************************999 PP

      DUF2776  99 etae.elvaghvvfGvgliaacvatvatsstkftlipknskkkkaeevpkeafsasaekvliavavlislialiwaivllskseekaeelvaGhvlvG 195
                  ++++ e+vaghv+fGvg+iaacv+tva+ss +f+lipkn++ +k++ +p +a+s+ + ++liav+vl++l+++iw+i+ll++ ++ ++++vaGhvl+G
  NP_417948.4  99 DVMAdEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRS-ADITPHYVAGHVLLG 195
                  988769**************************************************************************99.999************ PP

      DUF2776 196 lalicaslialvatvvrqirntysekerklWsklvlvlgsislllGivvllassasaalapGfiliglglvcysisskvlllakvWrrefklanriPl 293
                  l++ica+li+lvat+v+q+rnt+s+ke++lW+++v++lgsi++l+Gi+vl++s+asa+lapG+ili+lg++cysi+skv+lla vWrr+++lanriP+
  NP_417948.4 196 LTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPM 293
                  ************************************************************************************************** PP

      DUF2776 294 iPvltalaclflaaflfeaalldsayfiparvlvGlGavcftlfsivsilesGt 347
                  iPv+t+l+clfla+fl+e+a++d+ yfip+rvlvGlGavcftlfsivsile+G+
  NP_417948.4 294 IPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGS 347
                  *****************************************************8 PP



Or compare NP_417948.4 to CDD or PaperBLAST