PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3798882 to PF11011 (DUF2849)

VIMSS3798882 has 100 amino acids

Query:       DUF2849  [M=86]
Accession:   PF11011.12
Description: Protein of unknown function (DUF2849)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-30   89.7   0.8    8.7e-30   89.6   0.8    1.0  1  VIMSS3798882  


Domain annotation for each sequence (and alignments):
>> VIMSS3798882  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.8   8.7e-30   8.7e-30       1      83 [.       4      88 ..       4      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 8.7e-30
       DUF2849  1 kvvTAnrLldGevvyltadgkWsedlaeAavl..eeeaealaalaaaeaaaqevvgvyladveeeedgvepahlREriRakGPtv 83
                  kv+TAnrL dG++v+l adg+W+e+++ A v+  +e+ +al+++ + +a+a+ vv+v+++dvee+ + + p +lREriR  GPt+
  VIMSS3798882  4 KVLTANRLIDGQAVWLGADGSWQETIDGALVArhAEAVNALEEAGRLAARANLVVDVNVIDVEERGADLYPIRLRERIRLSGPTI 88
                  8*******************************9999999999999*******************9999****************8 PP



Or compare VIMSS3798882 to CDD or PaperBLAST