PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P0DJX1 to PF11081 (Adeno_L433K_22K)

SwissProt::P0DJX1 has 195 amino acids

Query:       Adeno_L433K_22K  [M=168]
Accession:   PF11081.12
Description: Adenovirus L4-33K/L4-22K
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
   1.8e-106  339.7   2.3   2.1e-106  339.5   2.3    1.0  1  SwissProt::P0DJX1  


Domain annotation for each sequence (and alignments):
>> SwissProt::P0DJX1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   2.3  2.1e-106  2.1e-106       1     167 [.       1     177 [.       1     178 [. 0.99

  Alignments for each domain:
  == domain 1  score: 339.5 bits;  conditional E-value: 2.1e-106
    Adeno_L433K_22K   1 mapkkklqlppppptdeeeywdsqaeevldeeeeimedldsldeaseaeevsdetpspsvafPspapqklatvpsiattsapqappalpvrr 92 
                        mapkkklqlppppptdeeeywdsqaeevldeeee+med+dsldeaseaeevsdetpspsvafPspapqklatvpsiattsapqappalpvrr
  SwissProt::P0DJX1   1 MAPKKKLQLPPPPPTDEEEYWDSQAEEVLDEEEEMMEDWDSLDEASEAEEVSDETPSPSVAFPSPAPQKLATVPSIATTSAPQAPPALPVRR 92 
                        89****************************************************************************************** PP

    Adeno_L433K_22K  93 pnrrwdttgtraakskrpptlaaefqqrrgqeselkiknrslaslt..........rsllyekdvkklrriledakklyskycal 167
                        pnrrwdttgtra+ksk+pp+la+e+qqr+g++s++++kn+++a+l+          r+lly+++v+++r+il+++++lys+yc++
  SwissProt::P0DJX1  93 PNRRWDTTGTRAGKSKQPPPLAQEQQQRQGYRSWRGHKNAIVACLQdcggnisfarRFLLYHHGVAFPRNILHYYRHLYSPYCTG 177
                        ***********************************************************************************97 PP



Or compare SwissProt::P0DJX1 to CDD or PaperBLAST