PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P45711 to PF11084 (DUF2621)

SwissProt::P45711 has 142 amino acids

Query:       DUF2621  [M=139]
Accession:   PF11084.12
Description: Protein of unknown function (DUF2621)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.5e-76  241.2   1.3    1.6e-76  241.1   1.3    1.0  1  SwissProt::P45711  


Domain annotation for each sequence (and alignments):
>> SwissProt::P45711  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.1   1.3   1.6e-76   1.6e-76       1     139 []       3     141 ..       3     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: 241.1 bits;  conditional E-value: 1.6e-76
            DUF2621   1 eelflllillwvvvlvvllaiGGyfmfrkflkrlpkedGkseldwqeeyiektrhlwtdeekelleelvepvpelfrdvakekiagkigela 92 
                        e++fl++il+wv+++vvll+iGG+fmfrkflkrlpkedG+seldwq++yie++rhlw+de+k++l+el++pvpelfrd ak+kiagkigela
  SwissProt::P45711   3 EGWFLWFILFWVIMMVVLLSIGGFFMFRKFLKRLPKEDGRSELDWQDYYIENSRHLWNDENKQFLDELTAPVPELFRDAAKAKIAGKIGELA 94 
                        58****************************************************************************************** PP

            DUF2621  93 leekakkitedliikGyilatpkrdhkflkkklkekeidlapyekll 139
                        l+ek++ki+++l+ikGyilatpkrdh+flk++l++k+idl+py++ll
  SwissProt::P45711  95 LKEKVAKIDQQLMIKGYILATPKRDHTFLKRHLRDKKIDLEPYQTLL 141
                        ********************************************986 PP



Or compare SwissProt::P45711 to CDD or PaperBLAST