PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS150929 to PF11254 (DUF3053)

VIMSS150929 has 236 amino acids

Query:       DUF3053  [M=219]
Accession:   PF11254.12
Description: Protein of unknown function (DUF3053)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.1e-100  320.9   8.3   2.4e-100  320.7   8.3    1.0  1  VIMSS150929  


Domain annotation for each sequence (and alignments):
>> VIMSS150929  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.7   8.3  2.4e-100  2.4e-100       1     218 [.      14     231 ..      14     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 320.7 bits;  conditional E-value: 2.4e-100
      DUF3053   1 lllllvvllLagCgdkepeqRkAFiafLqntviesgvkvpalteaqkkafGdyvsdYavltafsqqlsqavdtsleplldavsrirvvqdyvtrrdaL 98 
                  +++ll+v++L+gC+dke +qRkAF++fLqnt+++sg+++p+lt++qkk+fG++vsdYa+l+++sqq++qa+d++l+p++d+v++irv+qdy+t+r+ L
  VIMSS150929  14 VVALLMVFSLSGCFDKEGDQRKAFVDFLQNTAMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYMTQREPL 111
                  689*********************************************************************************************** PP

      DUF3053  99 rqaagalnelaqqlqnakaqadaaraaLkqpddlkavydkaydktVtapanalepvipaaesaledlvqvgdflqkqgdqvefegngiqvktpqqasq 196
                  rqa+g+l++laqqlqnak qadaa+ aLkq ddlk+v+d++y+k+Vt+pa+al+p+ipaa+ ++++lvqvgd++++qg+qv+f +ngiq++t+qqasq
  VIMSS150929 112 RQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVPADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQ 209
                  ************************************************************************************************** PP

      DUF3053 197 yNklltaLneqqqellqaqksl 218
                  yN l+ +L++q+q+++qa++ +
  VIMSS150929 210 YNALIGPLASQHQAFNQAWTAA 231
                  *******************865 PP



Or compare VIMSS150929 to CDD or PaperBLAST