PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2205171 to PF11294 (DUF3095)

VIMSS2205171 has 347 amino acids

Query:       DUF3095  [M=377]
Accession:   PF11294.12
Description: Protein of unknown function (DUF3095)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.1e-113  364.3   0.0    3.9e-81  259.0   0.0    2.0  2  VIMSS2205171  


Domain annotation for each sequence (and alignments):
>> VIMSS2205171  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.0   0.0   3.9e-81   3.9e-81       8     234 ..      12     235 ..       8     247 .. 0.97
   2 !  103.5   0.0   6.9e-34   6.9e-34     293     376 ..     250     334 ..     239     335 .. 0.96

  Alignments for each domain:
  == domain 1  score: 259.0 bits;  conditional E-value: 3.9e-81
       DUF3095   8 lkdfeeltdeslyapvpddWlivvtDivdSTkaiaegrykdVNlvgaaviaavlnalkkldiPfvFGGDGasllvppslleeareaLaalaelvkee 104
                     +f+ + d+++y+p+p+dWli++tD+v ST ai++gry dVN++ga+ iaa+ na ++ d+PfvF GDGa +++pp+ + +a +aL ++a+ ++++
  VIMSS2205171  12 YDEFSLVLDPAVYEPLPEDWLIGITDVVSSTLAIKSGRYEDVNFAGASIIAALGNAWGSFDFPFVFRGDGAAFALPPHGIMAATSALRRVASFARSD 108
                   578999******************************************************************************************* PP

       DUF3095 105 ldleLRvglvpvaeiraagldvrvaklavsekvsqamfsGgGlklaeeliKeseeyaieaaeketapdltGlsCRweeiparrgeilslivkaee.a 200
                   ldl+LR+gl+ v+eir++g dvr+a++a+se++++amf+GgGlk+ae++iK+ ++y +++    t+pdltGlsC w++ p+r+geilsl+v++++ +
  VIMSS2205171 109 LDLTLRIGLLTVREIRNSGRDVRIARYAASENATYAMFTGGGLKWAEQQIKN-GRYLVKPGRYATKPDLTGLSCDWAPFPSRQGEILSLLVEPNDhT 204
                   ****************************************************.******************************************99 PP

       DUF3095 201 deskeaelvkevieliekilGaeeelhpvkeekl 234
                   +++ +a+l+k+v++  ++   a+++ hp++ +k 
  VIMSS2205171 205 SPEVFAALAKRVLAVFDA---APRQSHPLSGDKA 235
                   9*****************...********87765 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 6.9e-34
       DUF3095 293 eevvensDfrkyddglkmvidcdeeqrdkleelLeaaeaaGklrYGlhrsdealmtClv.sereedhvhFvDgadGGYalAAkel 376
                   +ev++nsDfrk+ddgl++++dc++eq d +e++L aa+a+G++ +Glhr+ +almtClv s + + h+hF+Dg  GGYa+AA+++
  VIMSS2205171 250 SEVAANSDFRKFDDGLRLTLDCTPEQIDGVEAILVAARARGEINFGLHRQTHALMTCLVpSGSPDAHLHFLDGMGGGYARAAEMM 334
                   5799********************************************************9**********************98 PP



Or compare VIMSS2205171 to CDD or PaperBLAST