PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS147907 to PF11392 (DUF2877)

VIMSS147907 has 269 amino acids

Query:       DUF2877  [M=109]
Accession:   PF11392.12
Description: Protein of unknown function (DUF2877)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-34  103.1   0.1    1.1e-33  102.3   0.1    1.4  1  VIMSS147907  


Domain annotation for each sequence (and alignments):
>> VIMSS147907  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   1.1e-33   1.1e-33       1     108 [.     158     263 ..     158     264 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.1e-33
      DUF2877   1 lvGlGpGlTPsgDDflvGllaalallgakaakseaelleevaaaekkttdvSaalLraAlegevsesllallkalssedeeelakaieellaiGhtSG 98 
                  ++G GpGlTPs+DD+l+G+l+a +++ga ++++ ++++++  +  + tt vS ++Lr+A++g+++++ll++++al +++++  ++ai+ lla+GhtSG
  VIMSS147907 158 WLGKGPGLTPSHDDTLTGMLLAAWYFGAIDERAGRNFFAQSGSLDRATTLVSVSYLRYAAMGYFASPLLHFIHALRRDART--ETAIDGLLALGHTSG 253
                  68**************************************99**********************************98887..9************** PP

      DUF2877  99 adlllGlllg 108
                  ad+llG++lg
  VIMSS147907 254 ADTLLGFWLG 263
                  *******997 PP



Or compare VIMSS147907 to CDD or PaperBLAST