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Align NP_001320709.1 to PF11523 (DUF3223)

NP_001320709.1 has 1439 amino acids

Query:       DUF3223  [M=75]
Accession:   PF11523.12
Description: Protein of unknown function (DUF3223)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-28   84.3   0.5    9.7e-28   82.9   0.1    2.1  2  NP_001320709.1  


Domain annotation for each sequence (and alignments):
>> NP_001320709.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         1         1      52      68 ..    1210    1226 ..    1206    1226 .. 0.76
   2 !   82.9   0.1   9.7e-28   9.7e-28       1      75 []    1333    1405 ..    1333    1405 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1
         DUF3223   52 kgsrCFfvvrkDGtked 68  
                        s+CF    k+G ++d
  NP_001320709.1 1210 SPSQCFLKAAKEGVRDD 1226
                      4699**99999888776 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 9.7e-28
         DUF3223    1 kaiLhryedgeelneedekvllekllkyHpeaekKigagikaitvdkhpdfkgsrCFfvvrkDGtkedFSyrkCv 75  
                      k+iLh+ye++e lne de ++ + +l+ Hp++ +Kig+g+k i+v+k +++++s CF vvr DGt edFSy+kCv
  NP_001320709.1 1333 KRILHSYEINELLNERDEGLVKM-VLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCV 1405
                      78*****************9999.*********************98.688***********************8 PP



Or compare NP_001320709.1 to CDD or PaperBLAST