PaperBLAST – Find papers about a protein or its homologs

 

Align P94356 to PF11611 (DUF4352)

P94356 has 180 amino acids

Query:       DUF4352  [M=125]
Accession:   PF11611.12
Description: Domain of unknown function (DUF4352)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-20   58.1   7.2    8.4e-20   57.5   7.2    1.2  1  P94356    


Domain annotation for each sequence (and alignments):
>> P94356  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   7.2   8.4e-20   8.4e-20       1     118 [.      46     175 ..      46     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 8.4e-20
  DUF4352   1 skvgetvkvgdlevtvnsveytlsvgeneylqp..dagneflivdvtvkNkgkealtvnss.qfkLkdgdgkeydadlsasskadd.......lflgtlnpg 92 
              +++g+tvk+ ++evtv++ve +++vg ++y ++   +g++++ v+ t+kN +k++++  s+   kL+d+dg++yd d+ as +          ++l++lnp+
   P94356  46 YNIGDTVKTEKTEVTVTKVEDRDTVG-TQYVEKkaSEGGTIVAVQYTIKNVSKKPISSFSIpTVKLVDADGTSYDSDIDASVNYATetkvdnsKILSDLNPN 146
              79************************.66665534789*******************99999****************99754333477888********** PP

  DUF4352  93 kevsGklvFevpkgkkk...yeLeystsi 118
               +v+G  +Fev+k++      +L +s+++
   P94356 147 IKVTGVKAFEVDKEAYAkgtWKLKFSNDV 175
              **************987666777776665 PP



Or compare P94356 to CDD or PaperBLAST