PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS103933 to PF11611 (DUF4352)

VIMSS103933 has 331 amino acids

Query:       DUF4352  [M=125]
Accession:   PF11611.11
Description: Domain of unknown function (DUF4352)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-40  123.9   5.0    2.5e-40  123.9   5.0    2.3  2  VIMSS103933  


Domain annotation for each sequence (and alignments):
>> VIMSS103933  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   5.0   2.5e-40   2.5e-40       1     125 []      81     214 ..      81     214 .. 0.97
   2 ?   -1.3   3.5      0.14      0.14      22      81 ..     217     278 ..     209     295 .. 0.45

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 2.5e-40
                  BSTCEEECCTTEEEEEEEEEEEEEETTS-CEETT--SEEEEEEEEEEE-SSS-EEEEGGGEEEEETTEEE-BEEESCCCCTTB.........--EEEE CS
      DUF4352   1 skigetvkvgdlevtvnsveytksvgknellqqdagneflivdvtveNkgkealtvnssqfkLkdgdgksydadfsasskadd.........lflgtl 89 
                  +kigetvk+gdlevtvnsve++ksvg  +l  ++a+++f+++dvt++Nkgkealt++ss+fkLk+gd k+++ad+++s++a++         +fl+++
  VIMSS103933  81 HKIGETVKNGDLEVTVNSVETMKSVG-PSLAPTNAKGIFVVADVTIKNKGKEALTIDSSMFKLKSGD-KTFEADNTGSMSANQsdngsiensFFLQRI 176
                  79************************.**************************************99.**************9*************** PP

                  -TT-EEEEEEEEEESTT-CG...EEEEE-HBB-TTTCHH CS
      DUF4352  90 npgkkvsGklvFevpkgkkk...ykLeystslsfsgkki 125
                  np+++ +Gk+vF+v+++  +   +kLe+ +sl fs kki
  VIMSS103933 177 NPDSTAQGKIVFDVSENIANakdKKLEVISSL-FSVKKI 214
                  ****************9999889*****9999.999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.14
                  EEEETTS-CEETT--SEEEEEEEEEEE-SSS-EEEEGG...GEEEEETTEEE-BEEESCCCCT CS
      DUF4352  22 tksvgknellqqdagneflivdvtveNkgkealtvnss...qfkLkdgdgksydadfsasska 81 
                  ++s+  +++ +++++++   v v+  N ++  +  +++    ++  d+d++ ++ + ++++k+
  VIMSS103933 217 DLSDA-KKTSKAKKDKQDTEVAVASSNSDNVNYEASATtpaTTSSADTDSEDSEKSSKDEDKQ 278
                  33333.444444444444444444444444443333331004444444444444444444444 PP



Or compare VIMSS103933 to CDD or PaperBLAST