VIMSS14263 has 617 amino acids
Query: DUF3300 [M=227]
Accession: PF11737.12
Description: Protein of unknown function (DUF3300)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-84 268.5 7.4 2.3e-84 268.5 7.4 2.3 2 VIMSS14263
Domain annotation for each sequence (and alignments):
>> VIMSS14263
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 268.5 7.4 2.3e-84 2.3e-84 1 227 [] 74 333 .. 74 363 .. 0.87
2 ? -4.9 2.2 0.87 0.87 101 128 .. 487 514 .. 479 544 .. 0.64
Alignments for each domain:
== domain 1 score: 268.5 bits; conditional E-value: 2.3e-84
DUF3300 1 sqaeldqllapiALYPDsllsqvLmastyPlevveAerwskknkklkgdalvkavekkdWDpSvkaLvafpdvLekmsedldwtqklGdaflaqeeevl 99
s+a++dq++ap+ALYPD+llsqvLmastyP++v +A +ws++n+ +gda+ +av++++WD+Svk+Lvafp++++ m e+++w+q+lGdaflaq+++v+
VIMSS14263 74 STAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVM 172
579************************************************************************************************ PP
DUF3300 100 dsvqrLRqkAkeagnLksneqqkvvve................................keeiviepadpevvYvPyYdptvvYgawaypayppvywap 166
dsvqrLRq A+++g+Lks+++qkv+++ +++i iepa+p+vvY+P Y+ptvvYg+wa++ayppvy++p
VIMSS14263 173 DSVQRLRQLAQQTGSLKSSTEQKVITTtkkavpvkqtvtapvipsntvltanpvitepaTTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPP 271
*************************999******************************9999************************************9 PP
DUF3300 167 ppayasavgiafaagvaigl.....salfsefdWekrdvdvdvnranninknnsrskrkeekrwqh 227
p++ + + +f+ g+ +++ alfs++dW+++d d + + ++ + +++ +++ + wqh
VIMSS14263 272 PAG--EPFVDSFVRGFGYSMgvattYALFSSIDWDDDDHDHHHHDND--DYHHHDGGHRDGNGWQH 333
999..5555566666666655566679********999333333333..33344444466666666 PP
== domain 2 score: -4.9 bits; conditional E-value: 0.87
DUF3300 101 svqrLRqkAkeagnLksneqqkvvveke 128
++q+ R+ A+e+ + +s eq + v+ek
VIMSS14263 487 KIQQRREAARERIQSASPEQRQAVREKM 514
5777777777766666655555555433 PP
Or compare VIMSS14263 to CDD or PaperBLAST