VIMSS147543 has 540 amino acids
Query: DUF3300 [M=227]
Accession: PF11737.12
Description: Protein of unknown function (DUF3300)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-88 281.7 4.4 4.5e-88 280.6 4.4 1.5 1 VIMSS147543
Domain annotation for each sequence (and alignments):
>> VIMSS147543
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 280.6 4.4 4.5e-88 4.5e-88 2 227 .] 61 335 .. 60 340 .. 0.95
Alignments for each domain:
== domain 1 score: 280.6 bits; conditional E-value: 4.5e-88
DUF3300 2 qaeldqllapiALYPDsllsqvLmastyPlevveAerwskknkklkgdalvkavekkdWDpSvkaLvafpdvLekmsedldwtqklGdaflaqeeevl 99
+a++dq++ap+ALYPD+llsqvLmastyP++vv+A +ws++n++l+gda+ +av++++WDpSvk+Lvafp++++ m e+++w+q+lGdaflaq+++v+
VIMSS147543 61 TAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDNPTLQGDAAIQAVASQPWDPSVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVM 158
68************************************************************************************************ PP
DUF3300 100 dsvqrLRqkAkeagnLksneqqkvvve.......................keeiviepadpevvYvPyYdptvvYgawaypayppvywapppayasav 174
d+vqrLR A+++g+Lks+ qq+v++ +++i+iepa+p+vvYvP Y+p++vYgaw+++ayppvy++ppp+ +++
VIMSS147543 159 DAVQRLRLLAQQTGSLKSTPQQTVTSVpkssastavttttttsastpatpSTVIKIEPANPQVVYVPNYNPATVYGAWPNTAYPPVYLPPPPG--QQF 254
**************************99*********************999*****************************************..999 PP
DUF3300 175 giafaagvaigl.....salfsefdWekrd..........................vdvdvnranninknnsrskrkeekrwqh 227
+ +f++g+ ++l alfs++dW+++d ++++vn+ n+i+ +n ++ wqh
VIMSS147543 255 ADSFVKGFGYSLgvattYALFSSIDWDDDDhhhhdddhhdddyhhggngyqhngdnININVNNFNRISGQNLPG---QTMGWQH 335
9999999999888898899*******99888899999999**99999999999999999999999998887775...5666666 PP
Or compare VIMSS147543 to CDD or PaperBLAST