VIMSS1988695 has 252 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-18 52.1 0.0 3e-17 49.8 0.0 1.9 2 VIMSS1988695
Domain annotation for each sequence (and alignments):
>> VIMSS1988695
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 0.0 0.12 0.12 18 55 .. 66 99 .. 57 113 .. 0.61
2 ! 49.8 0.0 3e-17 3e-17 2 83 .. 139 239 .. 138 240 .. 0.89
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 0.12
HHHHHHHHTCH.TTS.HCCCCTTTTTTSS.TTTSSEEE CS
DUF3298 18 ikeqikkerekqeedelaglpepsrddrlilgyqnfyl 55
++e +++ +++ e+ + ++ d + ++yq+f
VIMSS1988695 66 VREYLRTLYNNWREKGADMVQ----DSWGEENYQQFGH 99
555566666666655444444....4677777777754 PP
== domain 2 score: 49.8 bits; conditional E-value: 3e-17
HCBSSC...T.HHHHHH.HHHHHHHHHHTCH.TTS.HCCCCTTT.TTTSS.TTTSSEEEETTEEEEEE-TTSSS........-GGG......-SEEE CS
DUF3298 2 dLFkpg...saylqrls.klikeqikkerekqeedelaglpeps.rddrlilgyqnfyltddglviyfppYeia........Pyaa......Gipef 79
d+ k g a +++l+ +++ ++++++++++++++++++++++ +d+++++gy++++lt+ +l++y p+Y++a P+ G++e+
VIMSS1988695 139 DIVKAGldpLAVIPPLAePFVAAALDRAAPPHQPGTYPFTVDRWtPDKVYSGGYKAWALTPSELILYLPDYPVAhdnpinyePGMPvwsmdgGAVEA 235
7777777777888999999999****************************************************999987774444777799***** PP
EEEH CS
DUF3298 80 eipy 83
+ip+
VIMSS1988695 236 HIPI 239
*997 PP
Or compare VIMSS1988695 to CDD or PaperBLAST