PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1988788 to PF11738 (DUF3298)

VIMSS1988788 has 230 amino acids

Query:       DUF3298  [M=84]
Accession:   PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-16   45.8   0.0    8.9e-16   45.0   0.0    1.4  1  VIMSS1988788  


Domain annotation for each sequence (and alignments):
>> VIMSS1988788  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   8.9e-16   8.9e-16       3      83 ..     149     222 ..     147     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 8.9e-16
                   CBSSCT.HHHHHHHHHHHHHHHHTCH.TTS.HCCCCTTTTTTSS.TTTSSEEEETTEEEEEE-TTSSS-GGG-SEEEEEEH CS
       DUF3298   3 LFkpgsaylqrlsklikeqikkerekqeedelaglpepsrddrlilgyqnfyltddglviyfppYeiaPyaaGipefeipy 83 
                   L++p+++ l+++ ++++ +++k+ e+q        +  s++  ++++yqnf++++dg++++f p e+ P aaG+ ++ +p 
  VIMSS1988788 149 LWQPETDPLEVVFPIVESELSKQSEEQV-------VIASSAGLDPKNYQNFAISNDGITFFFSPGELLPEAAGARQVLVPR 222
                   7889999*****************9888.......2233678999**********************************97 PP



Or compare VIMSS1988788 to CDD or PaperBLAST