PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2145418 to PF11738 (DUF3298)

VIMSS2145418 has 232 amino acids

Query:       DUF3298  [M=83]
Accession:   PF11738.12
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-18   52.0   0.0    9.1e-18   51.4   0.0    1.3  1  VIMSS2145418  


Domain annotation for each sequence (and alignments):
>> VIMSS2145418  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   9.1e-18   9.1e-18       2      82 ..     149     223 ..     148     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 9.1e-18
       DUF3298   2 DlFkpgsdylealselikkqlkkqaeeqeleeyeeleeefdaddisaydnFyltddglvfyfnpYeiaPyaaGaieftiPy 82 
                    lF+pg+  l++++++++++l++++      +++ l    d+ d+++y+nF++td++++f+f ++e+ P aaGai+ ++P+
  VIMSS2145418 149 TLFRPGTRPLDVVYPAVQRDLQAKTG----IDQPVLPA--DGLDPQNYQNFAVTDEAVIFFFGQGELLPEAAGAIQASVPR 223
                   69***********************5....44455555..79**************************************7 PP



Or compare VIMSS2145418 to CDD or PaperBLAST