VIMSS2230127 has 255 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-18 52.3 0.0 1.1e-17 51.1 0.0 1.6 2 VIMSS2230127
Domain annotation for each sequence (and alignments):
>> VIMSS2230127
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.0 0.59 0.59 16 48 .. 84 98 .. 71 134 .. 0.58
2 ! 51.1 0.0 1.1e-17 1.1e-17 2 84 .] 148 247 .. 147 247 .. 0.89
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 0.59
HHHHHHHHHHTCH.TTS.HCCCCTTTTTTSS.T CS
DUF3298 16 klikeqikkerekqeedelaglpepsrddrlil 48
++ +++ + ++ + ++
VIMSS2230127 84 NNWRNANSSMAAD------------------SY 98
3333333333322..................22 PP
== domain 2 score: 51.1 bits; conditional E-value: 1.1e-17
HCBSSC.T.HHHHHH.HHHHHHHHHHTCH.TTS.HCCCCTTT.TTTSS.TTTSSEEEETTEEEEEE-TTSSS.......-GGG.........-SEEE CS
DUF3298 2 dLFkpg.saylqrls.klikeqikkerekqeedelaglpeps.rddrlilgyqnfyltddglviyfppYeia.......Pyaa.........Gipef 79
dL +++ +++++l+ ++i+ +++++++++++++++++++++ +d++++++y+++++t+d+l++y+p+Y+++ + G++++
VIMSS2230127 148 DLTTSNpLTAIPPLAqPFIETALNQAPPPHDPGTYPFVVDRWtPDKVYSGAYKAWAITPDELILYMPDYPVGhdepinfA--TglpqwfmdgGTVQA 242
8888888899**************************************************************88887440..355555579999999 PP
EEEHC CS
DUF3298 80 eipys 84
+ip+s
VIMSS2230127 243 HIPLS 247
99986 PP
Or compare VIMSS2230127 to CDD or PaperBLAST