VIMSS2231876 has 258 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-15 44.1 0.1 3.9e-15 43.0 0.0 1.6 2 VIMSS2231876
Domain annotation for each sequence (and alignments):
>> VIMSS2231876
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 0.79 0.79 11 22 .. 64 75 .. 57 98 .. 0.57
2 ! 43.0 0.0 3.9e-15 3.9e-15 9 84 .] 161 251 .. 154 251 .. 0.80
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 0.79
HHHHHHHHHHHH CS
DUF3298 11 lqrlsklikeqi 22
+q+++++i +q
VIMSS2231876 64 EQPVADFISKQR 75
555555555553 PP
== domain 2 score: 43.0 bits; conditional E-value: 3.9e-15
.HHHHHHHHHHHHHHHHT............CH.TTS.HCCCCTTT...............TTTSS.TTTSSEEEETTEEEEEE-TTSSS-GGG-SEE CS
DUF3298 9 aylqrlsklikeqikker............ekqeedelaglpeps...............rddrlilgyqnfyltddglviyfppYeiaPyaaGipe 78
+ l++++++++ +++k+ + + + +++ +yq+f++t+dg++++f++ + P +aG+p+
VIMSS2231876 161 DPLATVAPIVQSELQKQTappanpnqpappA-----N-------QpasptptappvtvasAAAYDPANYQSFAITNDGVIFFFDQGRLLPDSAGAPQ 245
589999********99996666555333320.....2.......2334455578888888************************************* PP
EEEEHC CS
DUF3298 79 feipys 84
+ +p s
VIMSS2231876 246 VLVPRS 251
****75 PP
Or compare VIMSS2231876 to CDD or PaperBLAST