VIMSS357274 has 294 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-20 60.3 3.0 1.5e-20 60.3 3.0 2.3 3 VIMSS357274
Domain annotation for each sequence (and alignments):
>> VIMSS357274
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.0 0.47 0.47 13 33 .. 20 40 .. 6 52 .. 0.58
2 ? -1.1 0.2 0.22 0.22 11 11 .. 117 117 .. 70 174 .. 0.60
3 ! 60.3 3.0 1.5e-20 1.5e-20 3 82 .. 196 279 .. 195 281 .. 0.94
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 0.47
HHHHHHHHHHHHHTCH.TTS. CS
DUF3298 13 rlsklikeqikkerekqeede 33
+l ++++ k+++ k+++ +
VIMSS357274 20 PLPTDLQAEVKARFHKEKKRY 40
344445555555555554444 PP
== domain 2 score: -1.1 bits; conditional E-value: 0.22
H CS
DUF3298 11 l 11
+
VIMSS357274 117 A 117
1 PP
== domain 3 score: 60.3 bits; conditional E-value: 1.5e-20
CBSSCT.HHHHHHHHHHHHHHHHTCH.TTS.HCCCCTTT....TTTSS.TTTSSEEEETTEE.EEEE-TTSSS-GGG-SEEEEEE CS
DUF3298 3 LFkpgsaylqrlsklikeqikkerekqeedelaglpeps....rddrlilgyqnfyltddgl.viyfppYeiaPyaaGipefeip 82
+Fk++ y++++s +ik+qi ++++++++ ++ +e+ + +++i+++q fy++++ vi+fp+ eiaPy++G+pef+ip
VIMSS357274 196 IFKNDF-YIDVISSEIKQQIADQMKNDSNKIYWSEKEDApsdvQPFKKIKKDQPFYINEKHQlVIVFPQGEIAPYYMGTPEFVIP 279
799996.*****************99999******999999****************877655*********************9 PP
Or compare VIMSS357274 to CDD or PaperBLAST