PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3713710 to PF11738 (DUF3298)

VIMSS3713710 has 335 amino acids

Query:       DUF3298  [M=83]
Accession:   PF11738.12
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-19   54.9   8.7    5.3e-18   52.1   0.3    3.1  3  VIMSS3713710  


Domain annotation for each sequence (and alignments):
>> VIMSS3713710  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.5      0.19      0.19      38      38 ..      53      53 ..      21     133 .. 0.65
   2 !    7.1   0.1   0.00059   0.00059      19      67 ..     151     200 ..     136     203 .. 0.79
   3 !   52.1   0.3   5.3e-18   5.3e-18       1      82 [.     228     304 ..     228     305 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
       DUF3298 38 e 38
                   
  VIMSS3713710 53 T 53
                  1 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00059
       DUF3298  19 kkqlkkqaeeqeleeyeeleeefdaddisaydnFyl.tddglvfyfnpYe 67 
                    +qlk+  e+++ e+ e+l+e+++       +++yl    ++v++f+ Y+
  VIMSS3713710 151 LNQLKTVLEKDYQESLETLKEGMTLGISRTAETIYLgQRHNIVIFFQNYD 200
                   369999999999999999999877778888888999455566******97 PP

  == domain 3  score: 52.1 bits;  conditional E-value: 5.3e-18
       DUF3298   1 kDlFkpgsdylealselikkqlkkqaeeqeleeyeeleeefdaddisaydnFyltddglvfyfnpYeiaPyaaGaieftiPy 82 
                   +Dl+ p   ++ +ls++++  +++++e++++ +y++      ++d++ +++F +tddg+ f+++pY ++P a+G+i++t+P+
  VIMSS3713710 228 DDLLSPA--KQVELSAILWSHYEQRNEPDANGKYSTFTP---KQDFYVSEDFLFTDDGVKFIYPPYALGPFAEGEISLTVPW 304
                   6999999..9********************999999986...9**************************************9 PP



Or compare VIMSS3713710 to CDD or PaperBLAST