VIMSS39249 has 285 amino acids
Query: DUF3298 [M=83]
Accession: PF11738.12
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-28 84.4 1.8 4.3e-28 84.4 1.8 2.6 3 VIMSS39249
Domain annotation for each sequence (and alignments):
>> VIMSS39249
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.1 0.76 0.76 15 28 .. 22 35 .. 13 45 .. 0.69
2 ? 0.1 0.4 0.089 0.089 14 66 .. 101 146 .. 84 150 .. 0.58
3 ! 84.4 1.8 4.3e-28 4.3e-28 1 82 [. 189 271 .. 189 272 .. 0.97
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 0.76
DUF3298 15 selikkqlkkqaee 28
+ +++k+l++++++
VIMSS39249 22 DIIVEKALQQEPKK 35
44667777777764 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.089
DUF3298 14 lselikkqlkkqaeeqeleeyeeleeefdaddisaydnFyltddglvfyfnpY 66
ls l k+l++ +e++l+e ++l + + i+ ++ +++g ++ +Y
VIMSS39249 101 LSGLSNKELENSINEKYLKESQQLYK----EFIQSTSK---NKKGHLSIYSDY 146
55555566666665444554444443....44444444...555555555555 PP
== domain 3 score: 84.4 bits; conditional E-value: 4.3e-28
DUF3298 1 kDlFkpgsdylealselikkqlkkqaeeqeleeyeeleee.fdaddisaydnFyltddgl.vfyfnpYeiaPyaaGaieftiPy 82
k lFk+++ y++++s++ik+q+k+q++e++++ y+ ++e+ +++i ++++Fy+t+d v+ f++Ye+aP+++G +eftiP
VIMSS39249 189 KSLFKDER-YIKVISQNIKEQMKQQMKEDPNKIYWLTDEDaEPFKTILPDQTFYITEDHKlVISFDEYEVAPGYMGVTEFTIPT 271
579****5.***********************************************99999**********************5 PP
Or compare VIMSS39249 to CDD or PaperBLAST