VIMSS39249 has 285 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-24 73.4 1.3 1.2e-24 73.4 1.3 2.7 3 VIMSS39249
Domain annotation for each sequence (and alignments):
>> VIMSS39249
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 0.1 0.43 0.43 14 27 .. 21 34 .. 5 46 .. 0.59
2 ? 0.7 0.6 0.062 0.062 41 42 .. 106 117 .. 59 180 .. 0.56
3 ! 73.4 1.3 1.2e-24 1.2e-24 1 82 [. 189 270 .. 189 271 .. 0.96
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 0.43
HHHHHHHHHHHHTC CS
DUF3298 14 lsklikeqikkere 27
l+ ++++++++e++
VIMSS39249 21 LDIIVEKALQQEPK 34
33344455555544 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.062
T..........T CS
DUF3298 41 s..........r 42
+ +
VIMSS39249 106 NkelensinekY 117
022333322221 PP
== domain 3 score: 73.4 bits; conditional E-value: 1.2e-24
HHCBSSCT.HHHHHHHHHHHHHHHHTCH.TTS.HCCCCTTTTTTSS.TTTSSEEEETTEE.EEEE-TTSSS-GGG-SEEEEEE CS
DUF3298 1 sdLFkpgsaylqrlsklikeqikkerekqeedelaglpepsrddrlilgyqnfyltddgl.viyfppYeiaPyaaGipefeip 82
+ LFk++ y++++s++ikeq+k+++++++++ ++ ++e+ +++il++q+fy+t+d vi f++Ye+aP+++G ef+ip
VIMSS39249 189 KSLFKDE-RYIKVISQNIKEQMKQQMKEDPNKIYWLTDEDAEPFKTILPDQTFYITEDHKlVISFDEYEVAPGYMGVTEFTIP 270
579*999.6**********************************************999888*********************9 PP
Or compare VIMSS39249 to CDD or PaperBLAST