VIMSS537020 has 227 amino acids
Query: DUF3298 [M=84]
Accession: PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-15 44.6 0.1 2.7e-15 43.5 0.0 1.6 2 VIMSS537020
Domain annotation for each sequence (and alignments):
>> VIMSS537020
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 0.55 0.55 11 20 .. 62 71 .. 54 118 .. 0.62
2 ! 43.5 0.0 2.7e-15 2.7e-15 2 83 .. 145 219 .. 144 220 .. 0.92
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 0.55
HHHHHHHHHH CS
DUF3298 11 lqrlsklike 20
+q+l ++i++
VIMSS537020 62 EQALTDYITQ 71
4555555542 PP
== domain 2 score: 43.5 bits; conditional E-value: 2.7e-15
HCBSSCT.HHHHHHHHHHHHHHHHTCH.TTS.HCCCCTTTTTTSS.TTTSSEEEETTEEEEEE-TTSSS-GGG-SEEEEEEH CS
DUF3298 2 dLFkpgsaylqrlsklikeqikkerekqeedelaglpepsrddrlilgyqnfyltddglviyfppYeiaPyaaGipefeipy 83
+LF p+ a l+++ ++++++++++ + a+lp + ++++yqnf++tdd l++yf+p e P G++++ +p
VIMSS537020 145 NLFAPNAAPLDAIFPIVQRDLERQT----PLGAAILPS---TGHDPSHYQNFAITDDQLIFYFAPGEMLPAFGGPVQAQVPR 219
79***********************....555577776...699************************************96 PP
Or compare VIMSS537020 to CDD or PaperBLAST