PaperBLAST – Find papers about a protein or its homologs

 

Align WP_002354846.1 to PF11738 (DUF3298)

WP_002354846.1 has 294 amino acids

Query:       DUF3298  [M=83]
Accession:   PF11738.12
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-24   71.4   4.1      5e-24   71.4   4.1    2.1  3  WP_002354846.1  


Domain annotation for each sequence (and alignments):
>> WP_002354846.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.58      0.58      13      26 ..      20      33 ..       4      45 .. 0.49
   2 ?   -1.8   0.0      0.36      0.36      19      20 ..     121     122 ..      80     161 .. 0.65
   3 !   71.4   4.1     5e-24     5e-24       3      82 ..     196     280 ..     196     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.58
         DUF3298 13 alselikkqlkkqa 26
                    +l   ++++ k+++
  WP_002354846.1 20 PLPTDLQAEVKARF 33
                    23333344444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
         DUF3298  19 kk 20 
                      k
  WP_002354846.1 121 NK 122
                     22 PP

  == domain 3  score: 71.4 bits;  conditional E-value: 5e-24
         DUF3298   3 lFkpgsdylealselikkqlkkqaeeqeleeyeeleee.....fdaddisaydnFyltddgl.vfyfnpYeiaPyaaGaieftiPy 82 
                     +Fk++  y++++s +ik+q++ q+++++++ y++++e+       +++i++++ Fy++++   v++f+++eiaPy++G++ef+iP 
  WP_002354846.1 196 IFKNDF-YIDVISSEIKQQISDQMKNDSNKIYWSEKEDapsdvQPFKKIKKDQPFYINEKHQlVIVFPQGEIAPYYMGTPEFVIPN 280
                     799996.**************************************************999888**********************5 PP



Or compare WP_002354846.1 to CDD or PaperBLAST