PaperBLAST – Find papers about a protein or its homologs

 

Align WP_010930294.1 to PF11738 (DUF3298)

WP_010930294.1 has 275 amino acids

Query:       DUF3298  [M=84]
Accession:   PF11738.11
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-15   43.1   0.1    1.7e-14   40.9   0.0    2.0  2  WP_010930294.1  


Domain annotation for each sequence (and alignments):
>> WP_010930294.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16      0.16      11      30 ..      87     106 ..      84     140 .. 0.60
   2 !   40.9   0.0   1.7e-14   1.7e-14      41      84 .]     213     261 ..     182     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
                     HHHHHHHHHHHHHHHTCH.T CS
         DUF3298  11 lqrlsklikeqikkerekqe 30 
                     +++ls+l+ +q+ ++   ++
  WP_010930294.1  87 IPALSELVDRQLAAMTGVDQ 106
                     77888889999888874333 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 1.7e-14
                     T.....TTTSS.TTTSSEEEETTEEEEEE-TTSSS-GGG-SEEEEEEHC CS
         DUF3298  41 s.....rddrlilgyqnfyltddglviyfppYeiaPyaaGipefeipys 84 
                              + +++++nf+lt +glv+ ++ Y+iaPy+ G+pe+ ipy+
  WP_010930294.1 213 HdraayDRMWPFQETTNFALTRQGLVVKYDAYTIAPYSHGQPEILIPYE 261
                     03334456788999*********************************96 PP



Or compare WP_010930294.1 to CDD or PaperBLAST