PaperBLAST – Find papers about a protein or its homologs

 

Align O21894 to PF11753 (DUF3310)

O21894 has 128 amino acids

Query:       DUF3310  [M=59]
Accession:   PF11753.12
Description: Protein of unknwon function (DUF3310)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   37.3   2.3    1.2e-13   37.3   2.3    1.6  2  O21894    


Domain annotation for each sequence (and alignments):
>> O21894  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   2.3   1.2e-13   1.2e-13       5      58 ..       7      64 ..       4      65 .. 0.95
   2 ?   -3.2   0.0      0.51      0.51       9      15 ..     111     117 ..     103     122 .. 0.56

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.2e-13
  DUF3310  5 kHY.tkgdiEvIdvieekltgeefkgfllgNviKYvlRakkKng...leDlkKakwYl 58
             +HY ++ ++E  ++ + +++ ee++g+++  v+KY++Ra+kK+g    +D +Ka  Y+
   O21894  7 NHYaNEYGMELNEYFKHHFNYEELAGWYTMQVLKYLVRAGKKEGesyDKDRNKALDYA 64
             8*******************************************98889******996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.51
  DUF3310   9 kgdiEvI 15 
              k++i +I
   O21894 111 KEEIKAI 117
              3333333 PP



Or compare O21894 to CDD or PaperBLAST