PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::B6UL32 to PF11753 (DUF3310)

SwissProt::B6UL32 has 128 amino acids

Query:       DUF3310  [M=59]
Accession:   PF11753.12
Description: Protein of unknwon function (DUF3310)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.5e-13   36.9   2.3    1.5e-13   36.9   2.3    1.6  2  SwissProt::B6UL32  


Domain annotation for each sequence (and alignments):
>> SwissProt::B6UL32  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   2.3   1.5e-13   1.5e-13       5      58 ..       7      64 ..       4      65 .. 0.95
   2 ?   -3.3   0.0      0.54      0.54       9      15 ..     111     117 ..     104     122 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.5e-13
            DUF3310  5 kHY.tkgdiEvIdvieekltgeefkgfllgNviKYvlRakkKng...leDlkKakwYl 58
                       kHY ++ ++E  ++ + +++ ee++g+++  v+KY++Ra+kK+g    +D +Ka  Y+
  SwissProt::B6UL32  7 KHYaNEYGMELNEYFKHHFSYEELAGWYTMQVLKYLVRAGKKEGesyDKDRNKALDYA 64
                       8*******************************************98889******996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.54
            DUF3310   9 kgdiEvI 15 
                        k++i +I
  SwissProt::B6UL32 111 KEEIKAI 117
                        3333333 PP



Or compare SwissProt::B6UL32 to CDD or PaperBLAST