PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P74511 to PF11780 (DUF3318)

SwissProt::P74511 has 212 amino acids

Query:       DUF3318  [M=142]
Accession:   PF11780.12
Description: Protein of unknown function (DUF3318)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.8e-52  161.6   0.2      9e-52  160.9   0.2    1.3  1  SwissProt::P74511  


Domain annotation for each sequence (and alignments):
>> SwissProt::P74511  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.2     9e-52     9e-52       1     142 []      17     159 ..      17     159 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 9e-52
            DUF3318   1 rrLldllPaslRkevkivrakpeqskviqaefelpweverpiyinfdlWeklsklqrdllllrevawlqnakwfkpdlyqgallagllglvv 92 
                        rrL+ llP++l+++v+++ +++ ++++i++e+ +++e   +i++++ +We+l+ +qr+ll+++eva++q++++++++++++al++gl+g+v+
  SwissProt::P74511  17 RRLKSLLPPELQSWVMVEGSTEVNPPLIRSEELGRDEI--EIQVDLAKWENLAIDQRNLLFWHEVARIQSDTIPREGWEMAALAIGLGGAVG 106
                        7************************************8..9*************************************************** PP

            DUF3318  93 elvqqDavgvlvagglaaiagyqiwrknrsekr...eieadeaAikvaqrrGY 142
                        el++qD++++l+a+gl++i+gy++w+kn++ekr   +ieade+Ai++a+r+GY
  SwissProt::P74511 107 ELWVQDGLLLLLALGLCGISGYRLWQKNNGEKRikeAIEADEKAITLATRFGY 159
                        ********************************9**9****************9 PP



Or compare SwissProt::P74511 to CDD or PaperBLAST