NP_055938.2 has 1034 amino acids
Query: CUPID [M=136]
Accession: PF11819.12
Description: Cytohesin Ubiquitin Protein Inducing Domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.5e-61 190.3 8.2 2.1e-60 188.9 8.2 1.8 1 NP_055938.2
Domain annotation for each sequence (and alignments):
>> NP_055938.2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.9 8.2 2.1e-60 2.1e-60 1 136 [] 395 529 .. 395 529 .. 0.98
Alignments for each domain:
== domain 1 score: 188.9 bits; conditional E-value: 2.1e-60
CUPID 1 eskgelissssgsllssgsdesessekdkkeklralkkkqkaLqekLelkleELkklClrEAeLtGklpkeypLepgekppqvrRrigaafkldeeki 98
e+k+++i++s+gsl+ssgs++se+se++k+ek+ +lkkk+k LqekL +k+eELkk+ClrEAeLtGk+pkeypL+ gekppqvrRr+g+afkld+ ++
NP_055938.2 395 ETKSQFIMASNGSLISSGSQDSEVSEEQKREKILELKKKEKLLQEKLLKKVEELKKICLREAELTGKMPKEYPLNIGEKPPQVRRRVGTAFKLDD-NL 491
6799*******************************************************************************************.58 PP
CUPID 99 lqkeedpeLesLerelalqqqiveAarrLaeeenlske 136
l++eedp+L++Le+++ +qq++veAa++La+e++l+k+
NP_055938.2 492 LPSEEDPALQELESNFLIQQKLVEAAKKLANEPDLCKT 529
999*********************************95 PP
Or compare NP_055938.2 to CDD or PaperBLAST