SwissProt::Q3KP66 has 663 amino acids
Query: CUPID [M=136]
Accession: PF11819.12
Description: Cytohesin Ubiquitin Protein Inducing Domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-58 181.6 2.8 3.7e-58 181.6 2.8 2.1 2 SwissProt::Q3KP66
Domain annotation for each sequence (and alignments):
>> SwissProt::Q3KP66
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 181.6 2.8 3.7e-58 3.7e-58 1 136 [] 87 216 .. 87 216 .. 0.96
2 ? -2.4 3.3 0.25 0.25 38 60 .. 221 240 .. 215 245 .. 0.56
Alignments for each domain:
== domain 1 score: 181.6 bits; conditional E-value: 3.7e-58
CUPID 1 eskgelissssgsllssgsdesessekdkkeklralkkkqkaLqekLelkleELkklClrEAeLtGklpkeypLepgekppqvrRrigaafk 92
esk+e+++++sg++l+sg+d++ s++k e ++a++k+q+aL+++Le++leEL++lClrEAeLtG+lp+eypL+pgek+p+vrRrigaa+k
SwissProt::Q3KP66 87 ESKDEVSDTDSGIILQSGPDSPVSPMK---ELTHAVHKQQRALEARLEACLEELRRLCLREAELTGTLPAEYPLKPGEKAPKVRRRIGAAYK 175
79*************************...669*********************************************************** PP
CUPID 93 ldeekilqkeedpeLesLerelalqqqiveAarrLaeeenlske 136
ld+++++ +edp L+sLer+lalq qi+eAarrL+ eenls++
SwissProt::Q3KP66 176 LDDWALH--REDP-LSSLERQLALQLQITEAARRLCLEENLSRQ 216
***7555..5999.***************************986 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.25
CUPID 38 kkqkaLqekLelkleELkklClr 60
+k+ Lqe e+kl+EL++ Cl
SwissProt::Q3KP66 221 RKHSMLQE--EKKLQELQR-CLV 240
45555555..466666666.444 PP
Or compare SwissProt::Q3KP66 to CDD or PaperBLAST