SwissProt::Q8BIE6 has 1020 amino acids
Query: CUPID [M=136]
Accession: PF11819.12
Description: Cytohesin Ubiquitin Protein Inducing Domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-64 200.9 4.7 4.2e-64 200.9 4.7 2.1 2 SwissProt::Q8BIE6
Domain annotation for each sequence (and alignments):
>> SwissProt::Q8BIE6
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 200.9 4.7 4.2e-64 4.2e-64 2 136 .] 342 476 .. 341 476 .. 0.99
2 ? -2.2 0.3 0.22 0.22 7 28 .. 932 953 .. 924 969 .. 0.59
Alignments for each domain:
== domain 1 score: 200.9 bits; conditional E-value: 4.2e-64
CUPID 2 skgelissssgsllssgsdesessekdkkeklralkkkqkaLqekLelkleELkklClrEAeLtGklpkeypLepgekppqvrRrigaafkl 93
skg++is+ssgsllssgs+es+ss+++kk++l+alk++q+aL+e+L+++leELk+lClrEAeLtGklp eypL+pge+pp vrRrig+afkl
SwissProt::Q8BIE6 342 SKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKL 433
89****************************************************************************************** PP
CUPID 94 deekilqkeedpeLesLerelalqqqiveAarrLaeeenlske 136
de+kil+k e++eLe+Lere+a+q+qi+eAarrLa+++n+sk+
SwissProt::Q8BIE6 434 DEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKK 476
*****************************************96 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.22
CUPID 7 issssgsllssgsdesessekd 28
ss+sgs s+ s+++ + ++
SwissProt::Q8BIE6 932 TSSDSGSQYSTSSQSTFVAHSR 953
4566666666666665555543 PP
Or compare SwissProt::Q8BIE6 to CDD or PaperBLAST