YP_002344561.1 has 473 amino acids
Query: DUF3373 [M=409]
Accession: PF11853.12
Description: Protein of unknown function (DUF3373)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-41 127.6 6.1 8.8e-41 126.2 6.1 1.6 1 YP_002344561.1
Domain annotation for each sequence (and alignments):
>> YP_002344561.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.2 6.1 8.8e-41 8.8e-41 5 368 .. 106 445 .. 102 472 .. 0.78
Alignments for each domain:
== domain 1 score: 126.2 bits; conditional E-value: 8.8e-41
DUF3373 5 dtlytnrlrLnlkakatenvsfkgrLamyKafGeqddeavsnsnsksavlDgtlgevpsddslrvdrayftykniadvpiwfSvGRRPstdGaps 99
++ + n l Ln++a ++++++f grL+m K++++ + + + lD +++ s l vdray++y + ++ + vGR P tdG++s
YP_002344561.1 106 NNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGW------SGTPYDLDAGRNTRSSGPVLYVDRAYLDYY--ITPEWIATVGRQPGTDGPGS 192
566889**************************97654......2345689**********************7..5678**************** PP
DUF3373 100 nlrenkeerggsPlsllidveFDGatlgyalekvtelpgayvklCyGrGfenaagraegleakkenslkdvdllGliivpidddqykvel..qla 192
nlr+n+ +++ P +l i+ D a + y++e++++ + ++ yG+ + + ++ + + ++++ d +l+ ++ ++++ +e +
YP_002344561.1 193 NLRNNALRQSTYP-ALAINALGDAAVITYKPESLQDHK-VAIRAAYGKTYQWDEESGKVRDWMSDQKDADANLY----YAAVEGELPIEGmgDNL 281
*****88888899.9*****************877765.6799*****88775555554333444554566665....45557888877511333 PP
DUF3373 193 rafnifdypkgaaavsktlagnfkafgsvaessevGdidlagllflaevkgegiglddlnaFvslalsktepngnleaaltegllkdealgstes 287
fn+ + ++a ++ + g+ e +++G++ la + f + +g ++n+F+sl+ s+ n+ + t k g+ ++
YP_002344561.1 282 IIFNVAHMTDFALPIPG-----SMLLGDDDEVVNLGNLTLANIHFENYK-A--FG-TNFNWFASLGYSNGSNNEINPLLSTALQSKGYGNGKFNE 367
33444444433333333.....345788899**************9873.4..45.56***********9999985444444444444456789* PP
DUF3373 288 ktGysvyvGvrydleatkgklGlEYNhGSkyWisft.aaeDdligsKlatRGdvyevYliqelklkealslklgyqyydyeY 368
k+Gy+v+vG ryd+ ++ k+G E+ +GS+yW +++ ++ d + ++ tRG++ + Y+i++l+ + +l+l+y+ ++ +
YP_002344561.1 368 KDGYAVHVGGRYDF-TKALKVGYEFFWGSRYWYTMSrPSINDPLNIRM-TRGTAHDFYVIYQLD--RYQFLRLSYTNIQNIW 445
*************6.899*****************8357788888776.9**************..6889999999887555 PP
Or compare YP_002344561.1 to CDD or PaperBLAST