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Align NP_004970.3 to PF11879 (DUF3399)

NP_004970.3 has 647 amino acids

Query:       DUF3399  [M=76]
Accession:   PF11879.12
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-35  107.3   3.0    5.2e-35  106.1   3.0    1.7  1  NP_004970.3  


Domain annotation for each sequence (and alignments):
>> NP_004970.3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   3.0   5.2e-35   5.2e-35       2      75 ..     471     549 ..     470     550 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 5.2e-35
      DUF3399   2 tsllEsQHHHLLhCLEKTTnheFvdEqtyeenclevslqkrpsrspslssq....egltssCCsrrakr.sirlpnssl 75 
                  +s++E+QHHHLLhCLEKTT+heF+dE t++e++ +vs   r+srs+s+ssq     +l ssCC+rrakr +irl+ns++
  NP_004970.3 471 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSPGGRTSRSTSVSSQpvgpGSLLSSCCPRRAKRrAIRLANSTA 549
                  79**************************************************99999***********77*******86 PP



Or compare NP_004970.3 to CDD or PaperBLAST