NP_004970.3 has 647 amino acids
Query: DUF3399 [M=77]
Accession: PF11879.11
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.7e-35 105.8 3.1 1.8e-34 104.4 3.1 1.8 1 NP_004970.3
Domain annotation for each sequence (and alignments):
>> NP_004970.3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.4 3.1 1.8e-34 1.8e-34 2 76 .. 471 549 .. 470 550 .. 0.96
Alignments for each domain:
== domain 1 score: 104.4 bits; conditional E-value: 1.8e-34
DUF3399 2 tsllEsqHHHLLhCLEKTTnheFvdEqlyeqnclevslqkrpssrspslssq....eglsssCCsrrakk.strlpnssv 76
+s++E+qHHHLLhCLEKTT+heF+dE ++++++ +vs + r+s rs+s+ssq +l ssCC+rrak+ ++rl+ns++
NP_004970.3 471 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSPGGRTS-RSTSVSSQpvgpGSLLSSCCPRRAKRrAIRLANSTA 549
799****************************************.*********99999***********77*******86 PP
Or compare NP_004970.3 to CDD or PaperBLAST