SwissProt::P59994 has 178 amino acids
Query: DUF3399 [M=77]
Accession: PF11879.11
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-36 109.7 4.7 4.2e-36 109.7 4.7 1.6 2 SwissProt::P59994
Domain annotation for each sequence (and alignments):
>> SwissProt::P59994
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.7 4.7 4.2e-36 4.2e-36 2 76 .. 34 112 .. 33 113 .. 0.96
2 ? -2.2 0.1 0.35 0.35 43 63 .. 134 155 .. 128 158 .. 0.62
Alignments for each domain:
== domain 1 score: 109.7 bits; conditional E-value: 4.2e-36
DUF3399 2 tsllEsqHHHLLhCLEKTTnheFvdEqlyeqnclevslqkrpssrspslssq....eglsssCCsrrakk.strlpnssv 76
+s++E+qHHHLLhCLEKTT+heF+dE ++++++ +vsl+ r+s rs+s+ssq ++l ssCC+rrak+ ++rl+ns++
SwissProt::P59994 34 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSLGGRTS-RSTSVSSQpvgpSSLLSSCCPRRAKRrAIRLANSTA 112
79*****************************************.*************************77*******86 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.35
DUF3399 43 pssrspsls.sqeglsssCCsr 63
p+srs+ + ++++l C sr
SwissProt::P59994 134 PQSRSSLNAkPHDSLDLNCDSR 155
5556654431457777777666 PP
Or compare SwissProt::P59994 to CDD or PaperBLAST