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Align SwissProt::P59994 to PF11879 (DUF3399)

SwissProt::P59994 has 178 amino acids

Query:       DUF3399  [M=76]
Accession:   PF11879.12
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.2e-36  111.3   4.6    1.2e-36  111.3   4.6    1.5  2  SwissProt::P59994  


Domain annotation for each sequence (and alignments):
>> SwissProt::P59994  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   4.6   1.2e-36   1.2e-36       2      75 ..      34     112 ..      33     113 .. 0.96
   2 ?   -3.3   0.1      0.72      0.72      46      61 ..     138     154 ..     130     156 .. 0.51

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 1.2e-36
            DUF3399   2 tsllEsQHHHLLhCLEKTTnheFvdEqtyeenclevslqkrpsrspslssq....egltssCCsrrakr.sirlpnssl 75 
                        +s++E+QHHHLLhCLEKTT+heF+dE t++e++ +vsl  r+srs+s+ssq    ++l ssCC+rrakr +irl+ns++
  SwissProt::P59994  34 RSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSLGGRTSRSTSVSSQpvgpSSLLSSCCPRRAKRrAIRLANSTA 112
                        79****************************************************99************77*******86 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.72
            DUF3399  46 sps.lssqegltssCCs 61 
                        s+    ++++l   C s
  SwissProt::P59994 138 SSLnAKPHDSLDLNCDS 154
                        33202234666666655 PP



Or compare SwissProt::P59994 to CDD or PaperBLAST