PaperBLAST – Find papers about a protein or its homologs

 

Align XP_015132111.1 to PF11879 (DUF3399)

XP_015132111.1 has 632 amino acids

Query:       DUF3399  [M=77]
Accession:   PF11879.11
Description: Domain of unknown function (DUF3399)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-41  124.5   8.5    2.6e-40  123.2   8.5    1.8  1  XP_015132111.1  


Domain annotation for each sequence (and alignments):
>> XP_015132111.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   8.5   2.6e-40   2.6e-40       3      75 ..     474     546 ..     472     548 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 2.6e-40
         DUF3399   3 sllEsqHHHLLhCLEKTTnheFvdEqlyeqnclevslqkrpssrspslssqeglsssCCsrrakkstrlpnss 75 
                     s++E+qHHHLLhCLEKTTnheFvdEqlye++c+evs+ +rp s+spslssq+g++ +CCsrr+kk+ r+pn+ 
  XP_015132111.1 474 SSFETQHHHLLHCLEKTTNHEFVDEQLYEESCMEVSTVNRPPSHSPSLSSQQGVTGTCCSRRHKKTYRIPNTA 546
                     89*********************************************************************86 PP



Or compare XP_015132111.1 to CDD or PaperBLAST