A3X3R1 has 405 amino acids
Query: DUF3419 [M=385] Accession: PF11899.12 Description: Protein of unknown function (DUF3419) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-107 343.5 0.0 1.2e-106 343.1 0.0 1.0 1 A3X3R1 Domain annotation for each sequence (and alignments): >> A3X3R1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 343.1 0.0 1.2e-106 1.2e-106 5 384 .. 27 402 .. 24 402 .. 0.96 Alignments for each domain: == domain 1 score: 343.1 bits; conditional E-value: 1.2e-106 DUF3419 5 qFk...seliYaftWEDprvdleaLklepddtvlaItSaGdNiLsYllaspkrihaVDlNpaqnhLleLKlaaira.lsyedfwklfGegkhenfeellesk 102 qF+ +l+Y+++WEDp vd++aL++ p+d++++I+S+ +N LsYl+a p++++aVDl+pa+++L +LKlaa+r+ ++y+ f+++fG+++++++ l+e+ A3X3R1 27 QFSrlfLGLVYPQIWEDPVVDMAALEIAPSDHLVCIASGSCNLLSYLTAGPASVTAVDLSPAHVALGQLKLAAARSlPDYAAFYQFFGRADMPSNLPLYERY 128 666555789*******************************************************************99************************ PP DUF3419 103 lsphLssearqyWdkraekvFss....kgkglydtGssgrairlarllfrllglrkdvkklleaktleeqreiwekkirplllsklvsklvlgnekfllkal 200 + p+L +ar+yW+ r+ +F++ +kg+y+ G +gr++ +++l++ l ++ ++ ll+a++++eq+ ++++ki+pl+ + lv+kl ++l++l A3X3R1 129 IMPNLGLDARDYWEGRQ--LFNRrisvFQKGFYHYGVLGRFLGAVHLVAGLGRV--SFAPLLAARSVQEQQVFFDQKIAPLFDMWLVRKLA--GFRAALFGL 224 ****************9..55554444567**********************99..8*********************************9..77899**** PP DUF3419 201 Gvpknqlalleee.gesvaeyvvdtldpvaeklllsedNyFyllaltgky...tkeclPdyLkeeafeklkkradraldelrlhtdsleevlarlkkksltr 298 G+p++q++ l+++ +++v+ ++++++++++++++++ +NyF+++a+++ y + +lP+yL++++f++l+++a+r r+ ++s+++ l++ +++s + A3X3R1 225 GIPPAQYDKLAADgDGDVLPVLRERVRKLMCDFPIR-ENYFAWQAFARGYdpaPDGSLPPYLQQRNFQALRDNAER----GRIVNRSFTDQLEQEPDGSKQG 321 **********9998889*******************.*************8877889***************9988....9********************* PP DUF3419 299 avllDhmDWlsdedleeeiqelnralkpggrvllrsaaekpwyikrfeklgFkveaiaareege.eeskeleaiDrvnmYasfwiat 384 ++llD++DW++d++l++++q+++r+++pg++v++r+ +++ +++r+ + ai +r++++ e s++ +++Dr+++Y+ f++++ A3X3R1 322 YILLDAQDWMNDSQLNALWQQITRTATPGAKVIFRTGGTEDILPGRV------APAILDRWSYDlEVSEKGTKQDRSAIYGAFHLYR 402 ***********************************************......9******************************985 PP
Or compare A3X3R1 to CDD or PaperBLAST