PaperBLAST – Find papers about a protein or its homologs

 

Align XP_018645883.1 to PF11901 (DM9)

XP_018645883.1 has 156 amino acids

Query:       DM9  [M=115]
Accession:   PF11901.12
Description: DM9 repeat
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-45  137.5   1.8    2.5e-39  120.0   0.2    2.4  3  XP_018645883.1  


Domain annotation for each sequence (and alignments):
>> XP_018645883.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-06   1.7e-06      54      73 ..      11      30 ..       6      33 .. 0.89
   2 !  120.0   0.2   2.5e-39   2.5e-39       5     114 ..      31     144 ..      30     145 .. 0.96
   3 !   13.8   0.0   2.4e-06   2.4e-06      27      48 ..     131     152 ..     131     156 .] 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-06
             DM9 54 eyeWvpssdgsvpkgAvegG 73
                     ++W+p+s+g++p++A+++G
  XP_018645883.1 11 PLSWIPQSNGNYPENAISVG 30
                    589****************9 PP

  == domain 2  score: 120.0 bits;  conditional E-value: 2.5e-39
             DM9   5 spiYvgRakhegdllpgkvvpekgaayvsyggkehekseyevLv....akepseyeWvpssdgsvpkgAvegGttedgeplyigrakyegsltiG 95 
                     + ++v R ++ +++lpgk+vp++g++y+s+gg+e+e +eyevL+    ++  + yeWv+ss+g++pk+A+ +G  +dg+plyi+++++e+++++G
  XP_018645883.1  31 DGVFVVRSRFINEILPGKLVPKQGKCYCSHGGDEIELTEYEVLCdtslSELGKGYEWVKSSNGEYPKHAIIAGFGSDGKPLYIAKGYVEDNICVG 125
                     679*****************************************9988666789***************************************** PP

             DM9  96 kvhpshkvlyipyggkevs 114
                     k+h+ hk +y+p+gg+e +
  XP_018645883.1 126 KLHEGHKSAYMPWGGRENA 144
                     ****************975 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.4e-06
             DM9  27 kgaayvsyggkehekseyevLv 48 
                     +++ay+++gg+e++  eyevLv
  XP_018645883.1 131 HKSAYMPWGGRENAIPEYEVLV 152
                     568******************9 PP



Or compare XP_018645883.1 to CDD or PaperBLAST