PaperBLAST – Find papers about a protein or its homologs

 

Align NP_004810.2 to PF11935 (SYMPK_PTA1_N)

NP_004810.2 has 1274 amino acids

Query:       SYMPK_PTA1_N  [M=229]
Accession:   PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-62  196.8   3.5    2.5e-62  196.6   1.0    2.5  3  NP_004810.2  


Domain annotation for each sequence (and alignments):
>> NP_004810.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   1.0   2.5e-62   2.5e-62       2     227 ..     123     346 ..     122     348 .. 0.92
   2 ?   -2.8   0.0      0.21      0.21      19      65 ..     678     738 ..     664     739 .. 0.72
   3 ?   -4.1   0.0      0.54      0.54      88     107 ..     795     815 ..     794     829 .. 0.72

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 2.5e-62
  SYMPK_PTA1_N   2 pavvkrviqaaasiYplvlrlvakns...nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisd...prrpeendfslskv 91 
                   ++vvk++i++++++Y+++l++++k++   + + ++W++++a+  +i+ lld +dndg++++aiKF+e ++++ +++  +d   prr+ e d+sl+++
   NP_004810.2 123 VNVVKKAILTMTQLYKVALQWMVKSRvisELQeACWDMVSAMAGDIILLLD-SDNDGIRTHAIKFVEGLIVTLSPR-MADseiPRRQ-EHDISLDRI 216
                   79**********************999985556******************.777********************9.5543445544.679****** PP

  SYMPK_PTA1_N  92 prnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188
                   pr+hp+++++ L +E+k  l++lLk ++ +p+iss ++t+ l+sla+ia++Rp+++s++++a +++++       n+pptl+k+qv+sv+k+lk+ l
   NP_004810.2 217 PRDHPYIQYNVLWEEGKAALEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA-------NLPPTLAKSQVSSVRKNLKLHL 305
                   *************************.66889************************************9.......99******************** PP

  SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell..eeekk 227
                   l++lk++as +++++i+++l +lg+ ++eia+ +  +++++
   NP_004810.2 306 LSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMpsSKDTR 346
                   ******************************99988644444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.21
  SYMPK_PTA1_N  19 vlrlvaknsnds.elWekltalKskilsll.............deadndgvklaaiKFler 65 
                   +l+ v k  +d+  ++  ++ l++ i+++              ++++ d+v+ +a+ F++r
   NP_004810.2 678 ALEVVRKYCEDEsRTYLGMSTLRDLIFKRPsrqfqylhvlldlSSHEKDKVRSQALLFIKR 738
                   5666666444444888888888888888855888888888877666778888888888876 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.54
  SYMPK_PTA1_N  88 lskvprnhpll.kkqkLeaEA 107
                   l+ +p+nh+l+ + ++  +EA
   NP_004810.2 795 LALLPQNHKLIhELAAVYTEA 815
                   567899999996666666666 PP



Or compare NP_004810.2 to CDD or PaperBLAST