NP_004810.2 has 1274 amino acids
Query: SYMPK_PTA1_N [M=229] Accession: PF11935.12 Description: Symplekin/PTA1 N-terminal Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-62 196.8 3.5 2.5e-62 196.6 1.0 2.5 3 NP_004810.2 Domain annotation for each sequence (and alignments): >> NP_004810.2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 196.6 1.0 2.5e-62 2.5e-62 2 227 .. 123 346 .. 122 348 .. 0.92 2 ? -2.8 0.0 0.21 0.21 19 65 .. 678 738 .. 664 739 .. 0.72 3 ? -4.1 0.0 0.54 0.54 88 107 .. 795 815 .. 794 829 .. 0.72 Alignments for each domain: == domain 1 score: 196.6 bits; conditional E-value: 2.5e-62 SYMPK_PTA1_N 2 pavvkrviqaaasiYplvlrlvakns...nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisd...prrpeendfslskv 91 ++vvk++i++++++Y+++l++++k++ + + ++W++++a+ +i+ lld +dndg++++aiKF+e ++++ +++ +d prr+ e d+sl+++ NP_004810.2 123 VNVVKKAILTMTQLYKVALQWMVKSRvisELQeACWDMVSAMAGDIILLLD-SDNDGIRTHAIKFVEGLIVTLSPR-MADseiPRRQ-EHDISLDRI 216 79**********************999985556******************.777********************9.5543445544.679****** PP SYMPK_PTA1_N 92 prnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188 pr+hp+++++ L +E+k l++lLk ++ +p+iss ++t+ l+sla+ia++Rp+++s++++a +++++ n+pptl+k+qv+sv+k+lk+ l NP_004810.2 217 PRDHPYIQYNVLWEEGKAALEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA-------NLPPTLAKSQVSSVRKNLKLHL 305 *************************.66889************************************9.......99******************** PP SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell..eeekk 227 l++lk++as +++++i+++l +lg+ ++eia+ + +++++ NP_004810.2 306 LSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMpsSKDTR 346 ******************************99988644444 PP == domain 2 score: -2.8 bits; conditional E-value: 0.21 SYMPK_PTA1_N 19 vlrlvaknsnds.elWekltalKskilsll.............deadndgvklaaiKFler 65 +l+ v k +d+ ++ ++ l++ i+++ ++++ d+v+ +a+ F++r NP_004810.2 678 ALEVVRKYCEDEsRTYLGMSTLRDLIFKRPsrqfqylhvlldlSSHEKDKVRSQALLFIKR 738 5666666444444888888888888888855888888888877666778888888888876 PP == domain 3 score: -4.1 bits; conditional E-value: 0.54 SYMPK_PTA1_N 88 lskvprnhpll.kkqkLeaEA 107 l+ +p+nh+l+ + ++ +EA NP_004810.2 795 LALLPQNHKLIhELAAVYTEA 815 567899999996666666666 PP
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