NP_080881.2 has 1288 amino acids
Query: SYMPK_PTA1_N [M=229] Accession: PF11935.12 Description: Symplekin/PTA1 N-terminal Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-61 194.4 2.3 1.4e-61 194.2 0.7 2.0 2 NP_080881.2 Domain annotation for each sequence (and alignments): >> NP_080881.2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 194.2 0.7 1.4e-61 1.4e-61 2 225 .. 123 345 .. 122 349 .. 0.91 2 ? -4.1 0.0 0.55 0.55 88 107 .. 795 815 .. 794 829 .. 0.72 Alignments for each domain: == domain 1 score: 194.2 bits; conditional E-value: 1.4e-61 SYMPK_PTA1_N 2 pavvkrviqaaasiYplvlrlvakns...nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisd...prrpeendfslskv 91 ++vvk++i++++++Y+++l++++k++ + + ++W++++++ +i+ lld +dndg++++aiKF+e ++++ +++ +d prr +e d+sl+++ NP_080881.2 123 VNVVKKAILTMTQLYKVALQWMVKSRvisDLQeACWDMVSSMAGEIILLLD-SDNDGIRTHAIKFVEGLIVTLSPR-MADsevPRR-QEHDISLDRI 216 79**********************889974445******************.777********************9.444233554.4679****** PP SYMPK_PTA1_N 92 prnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188 pr+hp+++++ L +E+k +++lLk ++ +p+iss ++t+ l+sla+ia++Rp+++s++++a +++++ n+pptl+k+qv+sv+k+lk+ l NP_080881.2 217 PRDHPYIQYNVLWEEGKAAVEQLLK-FMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHA-------NLPPTLAKSQVSSVRKNLKLHL 305 *************************.66889************************************9.......99******************** PP SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell...eee 225 l++lk++as +++++i+++l +lg+ ++eia+ + +++ NP_080881.2 306 LSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMpssKDS 345 ******************************9998863333 PP == domain 2 score: -4.1 bits; conditional E-value: 0.55 SYMPK_PTA1_N 88 lskvprnhpll.kkqkLeaEA 107 l+ +p+nh+l+ + ++ +EA NP_080881.2 795 LALLPQNHKLIhELAAVYTEA 815 567899999996666666666 PP
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