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Align NP_649580.1 to PF11935 (SYMPK_PTA1_N)

NP_649580.1 has 1165 amino acids

Query:       SYMPK_PTA1_N  [M=229]
Accession:   PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-61  193.7   0.1    1.9e-61  193.7   0.1    2.5  3  NP_649580.1  


Domain annotation for each sequence (and alignments):
>> NP_649580.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.11      0.11     108     137 ..      65      94 ..      60     113 .. 0.53
   2 !  193.7   0.1   1.9e-61   1.9e-61       2     223 ..     117     335 ..     116     343 .. 0.91
   3 ?   -3.3   0.2      0.31      0.31     121     156 ..     972    1007 ..     965    1030 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.11
  SYMPK_PTA1_N 108 kglldllLkvlqeepiissslvtatlnsla 137
                   ++ l+ +L++ +++++ +   v+a +++++
   NP_649580.1  65 EEFLESVLSLAHDSNMEVRKQVVAFVEQVC 94 
                   445555555555554444444444444443 PP

  == domain 2  score: 193.7 bits;  conditional E-value: 1.9e-61
  SYMPK_PTA1_N   2 pavvkrviqaaasiYplvlrlvakns....nds.elWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisdprrpeendfslskvpr 93 
                   ++v+krviqa+ siY+  l+++++      +   ++W+ l+ +K++il+++d ++ndg++++aiKFle vv++q+ +   d+  + + dfsl++vp+
   NP_649580.1 117 AQVIKRVIQACGSIYKNGLQYLCSLMepgdS-AeQAWNILSLIKAQILDMID-NENDGIRTNAIKFLEGVVVLQSFA-DEDSL-KRDGDFSLADVPD 209
                   68*********************95555634.45******************.556*******************88.33323.34779*******9 PP

  SYMPK_PTA1_N  94 nhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkillln 190
                   +++l +++kL++E++++ld+lL+ ++ +++iss++++a+  sl++iak+Rp ++  +++a++++n+       n+pptl+ +qv+sv+k+lk++l+ 
   NP_649580.1 210 HCTLFRREKLQEEGNNILDILLQ-FHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEAFKQLNA-------NLPPTLTDSQVSSVRKSLKMQLQT 298
                   99999******************.9****************************************9.......99********************** PP

  SYMPK_PTA1_N 191 llkrnassplasriqqaleklgrllreiaell....e 223
                   llk++ + ++as+i+ +l +lg++ +ei++l+    +
   NP_649580.1 299 LLKNRGAFEFASTIRGMLVDLGSSTNEIQKLIpkmdK 335
                   *****************************99976552 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.31
  SYMPK_PTA1_N  121 epiissslvtatlnslaiiakkRpqlasrilsalls 156 
                     +  ++ +++a+l++l+ ++     ++ + ++ l  
   NP_649580.1  972 RDLYTQEVLMAVLQQLVEVTPLPTLMMRTTIQSLTL 1007
                    555566677777777766655444444444444444 PP



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