VIMSS6580659 has 785 amino acids
Query: SYMPK_PTA1_N [M=229]
Accession: PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-68 216.5 2.4 2.6e-68 216.2 1.0 2.0 2 VIMSS6580659
Domain annotation for each sequence (and alignments):
>> VIMSS6580659
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 216.2 1.0 2.6e-68 2.6e-68 1 229 [] 91 333 .. 91 333 .. 0.95
2 ? -3.7 0.0 0.4 0.4 154 181 .. 335 361 .. 334 380 .. 0.67
Alignments for each domain:
== domain 1 score: 216.2 bits; conditional E-value: 2.6e-68
SYMPK_PTA1_N 1 dpavvkrviqaaasiYplvlrlvaknsndselWekltalKskilsll....................dead...ndgvklaaiKFlervvlvqtkge 74
d+ v+k+++++++ Yplvl+lvak+sn +e++++l+ lK+++ls + + n+gvkla+iKF+++vvl qtk+
VIMSS6580659 91 DVLVYKNIVLIMCASYPLVLDLVAKTSN-QEMFDQLCMLKKFVLSHWrtayplratvddetdveqwlA--QidqNIGVKLATIKFISEVVLSQTKS- 183
678**********************999.*****************************9888877661..24469*******************99. PP
SYMPK_PTA1_N 75 isdprrpeendfslskvprnhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntppt 171
p+ n+++ s +p+nhp+l+k++Le+EAk+lld+lL++l+ee+ ++ss++++++nsl++++k+Rpq++ rils ll+fn+++k+ + ++
VIMSS6580659 184 ------PSGNEINSSTIPDNHPVLNKPALESEAKRLLDMLLNYLIEEQYMVSSVFIGIINSLSFVIKRRPQTTIRILSGLLRFNVDAKFPLEGKSDL 274
......6689*************************************************************************************** PP
SYMPK_PTA1_N 172 lsklqvksvektlkilllnllk.....rnassplasriqqaleklgrllreiaelleeekkrk 229
++kl++++ve+++k++++++lk ++ ss+ s+i+++l+k++++l+ i +ee+k+k
VIMSS6580659 275 NYKLSKRFVERAYKNFVQFGLKnqiitKSLSSGSGSSIYSKLTKISQTLHVI----GEETKSK 333
**********************9998877889********************....9999887 PP
== domain 2 score: -3.7 bits; conditional E-value: 0.4
SYMPK_PTA1_N 154 llsfnplkkaqsnntpptlsklqvksve 181
+l+f+p +k +s+ t + + kl+ s
VIMSS6580659 335 ILNFDP-SKGNSKKTLSRQDKLKYISLW 361
789999.555777777777777765554 PP
Or compare VIMSS6580659 to CDD or PaperBLAST