XP_003375880.1 has 1050 amino acids
Query: SYMPK_PTA1_N [M=229] Accession: PF11935.12 Description: Symplekin/PTA1 N-terminal Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-19 55.9 0.1 6.4e-18 51.3 0.1 2.6 2 XP_003375880.1 Domain annotation for each sequence (and alignments): >> XP_003375880.1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.3 0.1 6.4e-18 6.4e-18 3 222 .. 111 312 .. 109 322 .. 0.92 2 ? 1.3 0.0 0.012 0.012 113 145 .. 614 645 .. 607 662 .. 0.80 Alignments for each domain: == domain 1 score: 51.3 bits; conditional E-value: 6.4e-18 SYMPK_PTA1_N 3 avvkrviqaaasiYplvlrlvakns....ndselWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisdprrpeendfslskvpr 93 + +kr+ ++a iY ++l++v +++ + + +W +++++ +ls l+ ++n+g+k+ a KFler +l+ ++ ++l++ XP_003375880.1 111 HLLKRILSSMALIYHSALKWVLRKPpsqfGVDPTWHAVSEFITGVLSWLE-SENEGIKIYAFKFLERCILAKIEE-----------SWNLKSSAY 193 679********************9988887679**************999.556*******************76...........69******9 PP SYMPK_PTA1_N 94 nhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188 ++l+ +L+a + l+ l + l p+is s ++++l+sl+ i+++ ++++r l++ +++ + + pptls+ q++s k ++ l XP_003375880.1 194 GCQLVT--ELQASNDLLFSSLTRQLV-APHISFSGLSVCLKSLTDIVRNDATFLDRFLNCCKKLIV-------DIPPTLSHRQMESLFKVMRFHL 278 ***998..9***999999*****996.58************************************9.......899******************* PP SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell 222 l+k + s+ +i + l klg + +e+a l+ XP_003375880.1 279 TTLVKLPCLSKAVLEIASILHKLGISPAELAHLT 312 *****999999***********999999987766 PP == domain 2 score: 1.3 bits; conditional E-value: 0.012 SYMPK_PTA1_N 113 llLkvlqeepiissslvtatlnslaiiakkRpq 145 + L+vl++ + + s + +ln ++++k+Rp XP_003375880.1 614 QALQVLKQ-GCKQHSTYIPCLNMFTSVIKHRPG 645 56888854.68888899**************96 PP
Or compare XP_003375880.1 to CDD or PaperBLAST