PaperBLAST – Find papers about a protein or its homologs

 

Align XP_003375880.1 to PF11935 (SYMPK_PTA1_N)

XP_003375880.1 has 1050 amino acids

Query:       SYMPK_PTA1_N  [M=229]
Accession:   PF11935.12
Description: Symplekin/PTA1 N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-19   55.9   0.1    6.4e-18   51.3   0.1    2.6  2  XP_003375880.1  


Domain annotation for each sequence (and alignments):
>> XP_003375880.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   6.4e-18   6.4e-18       3     222 ..     111     312 ..     109     322 .. 0.92
   2 ?    1.3   0.0     0.012     0.012     113     145 ..     614     645 ..     607     662 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 6.4e-18
    SYMPK_PTA1_N   3 avvkrviqaaasiYplvlrlvakns....ndselWekltalKskilslldeadndgvklaaiKFlervvlvqtkgeisdprrpeendfslskvpr 93 
                     + +kr+  ++a iY ++l++v +++    + + +W +++++   +ls l+ ++n+g+k+ a KFler +l+  ++            ++l++   
  XP_003375880.1 111 HLLKRILSSMALIYHSALKWVLRKPpsqfGVDPTWHAVSEFITGVLSWLE-SENEGIKIYAFKFLERCILAKIEE-----------SWNLKSSAY 193
                     679********************9988887679**************999.556*******************76...........69******9 PP

    SYMPK_PTA1_N  94 nhpllkkqkLeaEAkglldllLkvlqeepiissslvtatlnslaiiakkRpqlasrilsallsfnplkkaqsnntpptlsklqvksvektlkill 188
                      ++l+   +L+a  + l+  l + l   p+is s ++++l+sl+ i+++  ++++r l++ +++ +       + pptls+ q++s  k ++  l
  XP_003375880.1 194 GCQLVT--ELQASNDLLFSSLTRQLV-APHISFSGLSVCLKSLTDIVRNDATFLDRFLNCCKKLIV-------DIPPTLSHRQMESLFKVMRFHL 278
                     ***998..9***999999*****996.58************************************9.......899******************* PP

    SYMPK_PTA1_N 189 lnllkrnassplasriqqaleklgrllreiaell 222
                       l+k +  s+   +i + l klg + +e+a l+
  XP_003375880.1 279 TTLVKLPCLSKAVLEIASILHKLGISPAELAHLT 312
                     *****999999***********999999987766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.012
    SYMPK_PTA1_N 113 llLkvlqeepiissslvtatlnslaiiakkRpq 145
                     + L+vl++  + + s  + +ln  ++++k+Rp 
  XP_003375880.1 614 QALQVLKQ-GCKQHSTYIPCLNMFTSVIKHRPG 645
                     56888854.68888899**************96 PP



Or compare XP_003375880.1 to CDD or PaperBLAST