PaperBLAST – Find papers about a protein or its homologs

 

Align G3V828 to PF11938 (DUF3456)

G3V828 has 279 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-47  148.2   3.7    1.7e-47  147.7   3.7    1.2  1  G3V828    


Domain annotation for each sequence (and alignments):
>> G3V828  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   3.7   1.7e-47   1.7e-47       1     147 [.      47     205 ..      47     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 1.7e-47
  DUF3456   1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmldYnlhkekktskr..........tlkrlasr..kgvkv 90 
              kCe+Ck++a el++a+++++++kev+ +g+ +     rk + +ky+kS+lrl+e+ e++C+++ldY+lhke+++s+r          t+++l+++  kgvkv
   G3V828  47 KCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD---RKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRfakvgfgmseTFETLHNLvhKGVKV 145
              8******************************984...4579*****************************************************999***** PP

  DUF3456  91 elgikyelwdedsaevnkslkkaCerlvEeyEdeieelykkeqeeedlekkLCser.....s 147
               ++i+yelw+e+saev ++lkk+C+ lvEe+E++ie++y+++qee dl+++LC+++     +
   G3V828 146 VMDIPYELWNETSAEV-ADLKKQCDVLVEEFEEVIEDWYRNHQEE-DLTQFLCANHvlkgkD 205
              ****************.************************9999.********99665544 PP



Or compare G3V828 to CDD or PaperBLAST