PaperBLAST – Find papers about a protein or its homologs

 

Align M3XQK4 to PF11938 (DUF3456)

M3XQK4 has 254 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-51  158.8   0.7      8e-51  158.5   0.7    1.1  1  M3XQK4    


Domain annotation for each sequence (and alignments):
>> M3XQK4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.7     8e-51     8e-51       1     150 []      99     243 ..      99     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 8e-51
  DUF3456   1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmldYnlhkekktskrtlkrlasrkgvkvelgikyelwded 102
              +C+aC+al+dele+++++v+pkk++++g+fr++++g+++  +++ya+Se++ltelleevC++m++Y ++ +++t+++ ++r+  r+g++   + + + ++ d
   M3XQK4  99 HCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVGRNGESN--ELDLQGIRID 198
              6************************************************************************************99665..5566666666 PP

  DUF3456 103 saevnkslkkaCerlvEeyEdeieelykkeqeeedlekkLCserskeC 150
               ++++ +lk+aCe++vEeyEde++e++++ ++ +++++kLCs+r+++C
   M3XQK4 199 -SDISGTLKFACESIVEEYEDELIEFFSR-EA-DNVKDKLCSKRTDLC 243
              .778899**********************.33.59***********99 PP



Or compare M3XQK4 to CDD or PaperBLAST