NP_001019411.1 has 188 amino acids
Query: DUF3456 [M=151]
Accession: PF11938.11
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-12 32.8 0.0 5.5e-11 29.4 0.0 2.3 1 NP_001019411.1
Domain annotation for each sequence (and alignments):
>> NP_001019411.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 5.5e-11 5.5e-11 1 151 [] 48 177 .. 48 177 .. 0.75
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 5.5e-11
DUF3456 1 kCeaCkavadeleealsktdpkkevdvggfrldkkgkrkkkkikyakSElrltellenvCekmld.Ynlhkerktkkrtlkrlksr..akgvkve 92
+C+aC+ava ++ ++l+k + k ++ + g++ + SE +t++l+ C++ ++ Y +++ ++ k+ l+ +kg
NP_001019411.1 48 RCDACRAVAYQMGQHLAKAEAKSHTPDS------SGSQ-------ELSESTYTDVLDRTCSQNWQsYGVQEVNQMKR-----LMGPglSKG---- 120
5***************877666665544......4654.......679************766666*****997765.....444312244.... PP
DUF3456 93 ldikyeawdeksaevskelkkaCerlveey.EdeieelykkeqeeeelekkLCeersklC 151
++++ + + + ++l+ C + + e+ Ed+i e+y++ +e le LC + ++C
NP_001019411.1 121 PEPSISVMITG-GPWPNRLSMTCFHYLGEFgEDQIYEAYRQGHE--TLEALLCGGTHGSC 177
44444444444.445699******9999986999*****99555..5******9988887 PP
Or compare NP_001019411.1 to CDD or PaperBLAST