NP_001305771.1 has 311 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-41 126.8 6.7 2e-33 102.1 2.3 2.2 2 NP_001305771.1
Domain annotation for each sequence (and alignments):
>> NP_001305771.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.1 3e-10 3e-10 1 48 [. 48 92 .. 48 95 .. 0.87
2 ! 102.1 2.3 2e-33 2e-33 49 147 .. 126 236 .. 117 239 .. 0.94
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 3e-10
DUF3456 1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakS 48
kCe+Ck++a el++a+++++++kev+ +g+ + + k + +ky+kS
NP_001305771.1 48 KCEVCKYVAVELKSAFEETGKTKEVIGTGYGILDQ---KASGVKYTKS 92
8******************************8843...3567777776 PP
== domain 2 score: 102.1 bits; conditional E-value: 2e-33
DUF3456 49 elrltelleevCekmldYnlhkekktskr.......tlkrlasr..kgvkvelgikyelwdedsaevnkslkkaCerlvEeyEdeieelykkeqe 134
+lrl+e+ e++C+++ldY+lhke+++s+r t+++l+++ kgvkv ++i+yelw+e+saev ++lkk+C+ lvEe+E++ie++y+++qe
NP_001305771.1 126 DLRLIEVTETICKRLLDYSLHKERTGSNRfakgmseTFETLHNLvhKGVKVVMDIPYELWNETSAEV-ADLKKQCDVLVEEFEEVIEDWYRNHQE 219
79*****************************************999*********************.************************999 PP
DUF3456 135 eedlekkLCser.....s 147
e dl+++LC+++ +
NP_001305771.1 220 E-DLTEFLCANHvlkgkD 236
9.********99665544 PP
Or compare NP_001305771.1 to CDD or PaperBLAST