NP_001305771.1 has 311 amino acids
Query: DUF3456 [M=151]
Accession: PF11938.11
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-42 130.2 6.5 1.5e-34 105.9 2.4 2.2 2 NP_001305771.1
Domain annotation for each sequence (and alignments):
>> NP_001305771.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.2 0.1 5.2e-10 5.2e-10 1 48 [. 48 92 .. 48 95 .. 0.87
2 ! 105.9 2.4 1.5e-34 1.5e-34 49 149 .. 126 237 .. 118 239 .. 0.95
Alignments for each domain:
== domain 1 score: 26.2 bits; conditional E-value: 5.2e-10
DUF3456 1 kCeaCkavadeleealsktdpkkevdvggfrldkkgkrkkkkikyakS 48
kCe+Ck+va el++a+++t+++kev+ +g+ + + k + +ky+kS
NP_001305771.1 48 KCEVCKYVAVELKSAFEETGKTKEVIGTGYGILDQ---KASGVKYTKS 92
8******************************7733...3567777776 PP
== domain 2 score: 105.9 bits; conditional E-value: 1.5e-34
DUF3456 49 ElrltellenvCekmldYnlhkerktkkr.......tlkrlksr.akgvkveldikyeawdeksaevskelkkaCerlveeyEdeieelykkeqe 135
+lrl+e+ e++C+++ldY+lhker++++r t+++l+++ +kgvkv +di+ye+w+e+saev ++lkk+C+ lvee+E++ie++y+++qe
NP_001305771.1 126 DLRLIEVTETICKRLLDYSLHKERTGSNRfakgmseTFETLHNLvHKGVKVVMDIPYELWNETSAEV-ADLKKQCDVLVEEFEEVIEDWYRNHQE 219
79******************************************99*********************.************************999 PP
DUF3456 136 eeelekkLCeer.....sk 149
e +l+++LC+++ ++
NP_001305771.1 220 E-DLTEFLCANHvlkgkDT 237
9.********996665555 PP
Or compare NP_001305771.1 to CDD or PaperBLAST