NP_001379479.1 has 310 amino acids
Query: DUF3456 [M=151]
Accession: PF11938.11
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-15 44.2 13.4 6.2e-11 29.2 0.0 2.8 3 NP_001379479.1
Domain annotation for each sequence (and alignments):
>> NP_001379479.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.2 0.0 6.2e-11 6.2e-11 1 63 [. 26 82 .. 26 91 .. 0.82
2 ! 22.4 3.2 7.6e-09 7.6e-09 109 151 .] 94 135 .. 82 135 .. 0.89
3 ? -3.2 0.8 0.61 0.61 84 84 .. 267 267 .. 232 302 .. 0.53
Alignments for each domain:
== domain 1 score: 29.2 bits; conditional E-value: 6.2e-11
DUF3456 1 kCeaCkavadeleealsktdpkkevdvggfrldkkgkrkkkkikyakSElrltellenvCekm 63
kC C+++++++ e l+kt++++ g+ ++k+ ky++SE+rl+e+le+vC+k
NP_001379479.1 26 KCRTCNFLVSTFDEGLKKTARHH-FAGGDTA-----WEEKNLGKYKTSETRLIEVLEGVCKKS 82
8***************8887654.4344333.....3347889*****************875 PP
== domain 2 score: 22.4 bits; conditional E-value: 7.6e-09
DUF3456 109 kelkkaCerlveeyEdeieelykkeqeeeelekkLCeersklC 151
+e++++C + +e++E++iee+y+++q++ +++++LC e klC
NP_001379479.1 94 AEIEFKCSTQLEKHEETIEEFYYNQQHN-NMSNWLCVEQLKLC 135
6899********************7777.********998888 PP
== domain 3 score: -3.2 bits; conditional E-value: 0.61
DUF3456 84 s 84
NP_001379479.1 267 C 267
1 PP
Or compare NP_001379479.1 to CDD or PaperBLAST