NP_001379479.1 has 310 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.5e-18 51.2 6.4 1.6e-10 27.8 0.0 2.8 2 NP_001379479.1
Domain annotation for each sequence (and alignments):
>> NP_001379479.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.8 0.0 1.6e-10 1.6e-10 1 63 [. 26 82 .. 26 90 .. 0.81
2 ! 23.2 3.7 4.1e-09 4.1e-09 108 150 .] 94 135 .. 86 135 .. 0.91
Alignments for each domain:
== domain 1 score: 27.8 bits; conditional E-value: 1.6e-10
DUF3456 1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekm 63
kC C++l++++ e l+k+++++ g+ + ++k+ ky++Se+rl+e+le+vC+k
NP_001379479.1 26 KCRTCNFLVSTFDEGLKKTARHH-FAGGD-----TAWEEKNLGKYKTSETRLIEVLEGVCKKS 82
8***************8887654.44443.....233357899*****************986 PP
== domain 2 score: 23.2 bits; conditional E-value: 4.1e-09
DUF3456 108 kslkkaCerlvEeyEdeieelykkeqeeedlekkLCserskeC 150
++++++C + +E++E++iee+y+++q++ +++++LC e+ k+C
NP_001379479.1 94 AEIEFKCSTQLEKHEETIEEFYYNQQHN-NMSNWLCVEQLKLC 135
5799********************7777.********998888 PP
Or compare NP_001379479.1 to CDD or PaperBLAST